Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06770 ATGGAGAAGACGCGACTAGATAACTTATTTCCTCTGACTCCAAGTTCAATATTCTCGACCAAGAAGGGACGCAGTGGATACGAGCCATCAGACACGGAGACGGAGTGGCAAGACACTCCGCGTCATGAACGAGGTAGAAAGAACACGAATATGAGTCCTGAAGAAACAAAAGCTATGTCTCAGAGTAACAAAAGTCCAATGATACTCCACAAGAGACACCCTTCAAAATTTGAATTTGAAGTCTTGTCGTCACCTTCAATAACAGGTTCAGTTCTTAACCAACCAAGAAGACGACATCTCAGCAAATCACCCTATAAGATACGTATAGCACGAGATGATGGTAATGATGATGACGATGCTTCGTTATCATACATGTCTGGTTTAAACTCAAGTAGAAATATTAGTCCTTTGCCGAGATCAGACTTTGGAAGAACAGTGTCTCCTTATAACAGAAATCATCAGCAAAGAACACCTTCTAATGAAAACAGGAAAGCGAATTCAGGGCTTCTGGAAGTGGATAGAGTGAGTACAAAACCAAACTATAGGAGAGCGGTGACTGCTCCAAGATTGAGAGAACCACAACAAACATTGCAAAACACGGTGAGGATTCTGAAACAAAGGGAAAAATCTCCCTTCAAAACAGGTTCAGTTAGAGAAAGAGAAGTCAATGAAATGATAGCACAGGTGAAGATATCGAAAAATGATCCTACCGATGATTATTCATCGGCACTAGAAAGTACAGATTCAATTCAACCAGGTGATCTTTTCTTTTCCCGCGAATGCAATGCCTTGCAAGCCAAGAATCCTTCATTGCCTAAAAAAGTTGAACAATACGGGTATTTTAGTCCGAGACCAGTGATCACTACCATTAACAACCCATCTGAAAGTGGTAAATTCAATACGAATACGAATATGAATAAGCCAAGAACCTCTTCAAGTAATGCATTGTTATCTCGAACAACGATGGGACCATCAATCAGAAAGGGAAGTGGAACTGGAAAGTCTAGCGCTAAATCCAGCGTAAAAAGTGATGCTAGCACAAAGACAACCGAAAGCATGAGGAAATTCACATCCAACAGAAAAAAGAGCCAGAAAGATGCATGGTTTGCCTGCATGATGAGAACAGGAAACTGTAGAACTTCAAGAAAATCACCTGAACGTAGACCAATCGACGAGGCTTCGTTGATTGAGAGGGCAACAATTGTGGAAAGCATTCCACAATTATGGGCTGATAAACATCAACCAGCTTCACTCAATGGCTTCATTTGCAACAAACAAGAAGCTCAACTTCTCAAGGAACTAGTGTCACAAGGCTCTTGCCCTCACATTTTGCTCAAAGGACCCTCTGGTTCCGGGAAAAGAGATCTAGCAATGGCTTTTCTTAGAGAAGCATACGGTGATTCATGTTGTAAACTGTCACATGATCTAAGACATTTCCCTATTCAGGACAAAAGGACTGTGAAAGTATCGGTTTCAATCACATCGAGTCCTCATCACATGGAGCTCAATGTAAATTCAGAACCAAATGCCAAATATGCTTTGATGGGATTAATCAAAGAAATTAGCAATATATATGCAATTGCCCCTGAAGTAAGCAATGTCAATTTCAAGTCAAATTATAAAGTAATAATTCTTTACGGGGTCGACAAAGCTGTAGAGAACATTCAACACTTGATCAAATGGATCATAGACCGATATTCAGATATATGCAAATTAGTTCTATGCTGTGAAGATGATGAAAATATTATTGCACCTGTGAAAAACCGGTTCAAAGTTATCAATGTTGATGCTCCTCAAACTCATGAAATTATTGAGGCTCTTACTCAGATAGCAAATAAAGAAGAAATTGATCTATCCATGAGTTTTGCCATGAAGATTGCTACAAAAGCTAAGCAGAACCTCAGGGAAGCAATATTGGCTCTTGAAGCCTGCAAAGCACACAACTATCCATTTTCAGAAGAACAACCGATTCCAGTTGGATGGGAGAAGATTGTAATAGAACTTGCTGTAGAGATTCTAACCGATCCATCATTTTCACGCTTACTCTCAATAAGAGGGAAATTTCAAATGCTTCTCCTGGACTTTGTCCACCCGAAATTGATTCTCCTGAAACTTGTGGAAGAGCTCCTAAGAAGAGTTGAGACCGGAGTAAAAAGGGAGCTCTACTACTGGCATGCTTATTATGATAGAAGACTTCCACCAGGAACAACAGCTTTACTAAAATTAGAAGAATTTGTGGCCAAGTTCATGAGCATGTGTAGAAAAAGCTCAGGAAGTAGACAATATGTGTAG 2292 0.3992 MEKTRLDNLFPLTPSSIFSTKKGRSGYEPSDTETEWQDTPRHERGRKNTNMSPEETKAMSQSNKSPMILHKRHPSKFEFEVLSSPSITGSVLNQPRRRHLSKSPYKIRIARDDGNDDDDASLSYMSGLNSSRNISPLPRSDFGRTVSPYNRNHQQRTPSNENRKANSGLLEVDRVSTKPNYRRAVTAPRLREPQQTLQNTVRILKQREKSPFKTGSVREREVNEMIAQVKISKNDPTDDYSSALESTDSIQPGDLFFSRECNALQAKNPSLPKKVEQYGYFSPRPVITTINNPSESGKFNTNTNMNKPRTSSSNALLSRTTMGPSIRKGSGTGKSSAKSSVKSDASTKTTESMRKFTSNRKKSQKDAWFACMMRTGNCRTSRKSPERRPIDEASLIERATIVESIPQLWADKHQPASLNGFICNKQEAQLLKELVSQGSCPHILLKGPSGSGKRDLAMAFLREAYGDSCCKLSHDLRHFPIQDKRTVKVSVSITSSPHHMELNVNSEPNAKYALMGLIKEISNIYAIAPEVSNVNFKSNYKVIILYGVDKAVENIQHLIKWIIDRYSDICKLVLCCEDDENIIAPVKNRFKVINVDAPQTHEIIEALTQIANKEEIDLSMSFAMKIATKAKQNLREAILALEACKAHNYPFSEEQPIPVGWEKIVIELAVEILTDPSFSRLLSIRGKFQMLLLDFVHPKLILLKLVEELLRRVETGVKRELYYWHAYYDRRLPPGTTALLKLEEFVAKFMSMCRKSSGSRQYV 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06770 763 MobiDBLite consensus disorder prediction 289 361 - -
Vifa1g06770 763 MobiDBLite consensus disorder prediction 9 25 - -
Vifa1g06770 763 Gene3D - 600 657 - -
Vifa1g06770 763 MobiDBLite consensus disorder prediction 131 166 - -
Vifa1g06770 763 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 409 742 - -
Vifa1g06770 763 Gene3D - 660 753 - -
Vifa1g06770 763 MobiDBLite consensus disorder prediction 131 169 - -
Vifa1g06770 763 MobiDBLite consensus disorder prediction 1 63 - -
Vifa1g06770 763 FunFam Replication factor C subunit 3 407 598 - -
Vifa1g06770 763 MobiDBLite consensus disorder prediction 289 353 - -
Vifa1g06770 763 FunFam replication factor C subunit 3 599 657 - -
Vifa1g06770 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 646 IPR027417 -
Vifa1g06770 763 MobiDBLite consensus disorder prediction 26 51 - -
Vifa1g06770 763 Gene3D - 407 598 IPR027417 -
Vifa1g06770 763 SUPERFAMILY post-AAA+ oligomerization domain-like 660 752 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06770 Vifa-Chr1 1045903230 1045906497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06770 408 752 Core DNA Replication Machinery Family AT5G27740 37.644 1.40e-76 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06770 K10756 - gmx:100795321 973.77