Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06754 ATGAGATCCCCTATGTTTGGTGGTTTCTCTTCCTCATTCACAAACATTGGTTCAACATCATCATGGTTCGAGATATATGCTGCCTTTTCAACATTCATGATGCTCTTAAGAACCGCAATCAACGATCTGATACCCTTCAAACTTCGAAACTACATTATCTCAAAAATCTCATCGTTCTTCACAAATTACCAACCCAACAACCAAGTCTCACTTCAAATCGACCAGTTTTGGGATGGACTCACCAACCACCTATACTATGCAGCCAAAGAGTATCTCCCAACTAAAATCTCCAACACTTACAAGTCCCTGAAAGTTGGCAAAATATCGAAACACAACAACGTTCTCTTAGCTTTCGATGGAAAACAAGTAGTCACGGACGAGTTTGAAGATATCAAAGTCAAATGGAAGCTCATTGAAAATTCTAAAGATGATGAATTTTTCGAAAATCCTAGGAAGGAATTTAAGCATCATAATAAGTCAAAAGACTACGATGAAAACGGATTTGTGTTAAGTTTTGATGAGAAATATAGAGAAAAAGTAATGAAGAAGTATATTCCTCATATTTTAAGCACTTATGAAACTATAAAAGCAGGAAATAGAACTCTCAAGATTCATTCTATGCAATCTGGGCCTTGGAAACAAAGTGATTTAACACATCCTGCTTCATTTGATTCAATCGCTTTGGATCCTGATCTGAAGAAATCTATAATTGATGATTTAGATAGGTTCTTGAGGAGGAAGAAGCTTTATCAAAAAGTGGGTAAGCCTTGGAAACGTGGCTATCTTTTGTATGGTCCACCAGGGACAGGAAAATCTAGTCTTATTGCTGCTATAGCTAAGCACTTGAAATTTGATGTGTATGATTTGGATCTGAGTTCAGTGTTTTCTAACTCGGAACTCATGAGAGCCATGAGAGAAACATCTAACAGATCTATCGTCGTCTTTGAAGATATTGACTGCAACACTGAAGTGCTTGATCGATCAAAATCAGACAAGTTTTCAGATAATGATTTTGTAGACACTCCTGGTGGTGGTAAGATGGTTAGGAACATGCCTATGCCTATGCCGAGAAAGTTTACTCTTTCGGGTCTTCTTAATTATATGGATGGATTGTGGTCAAGCTGTGGAGAGGAAAGGATTTTGATATTTACTACAAATCATAAGGACAAAGTTGATTCTGCGTTGTTGCGTCCCGGTCGAATGGATATGCATATTCACTTGTCATTTCTTAAAGGCAAGGCGTTTAGAATCTTAGCTTCTAATTATTTGGACATTGAAGAACAACATGGTCCACTCATTGAACAAATTGAGGAGCTATTGGGAAAAGTTGATGTCACCCCTGCAGTAGCAGCAGAGTATTTGTTGAGAAGTGAGGATCCTAGTGTTGCTCTTGAAGCACTTGTTCAATTTCTTCAAGAAATTGATGTTTCAAAAGTTGTTGTAAATGAAGAGAATAATCAGAAAGTTTAG 1470 0.3728 MRSPMFGGFSSSFTNIGSTSSWFEIYAAFSTFMMLLRTAINDLIPFKLRNYIISKISSFFTNYQPNNQVSLQIDQFWDGLTNHLYYAAKEYLPTKISNTYKSLKVGKISKHNNVLLAFDGKQVVTDEFEDIKVKWKLIENSKDDEFFENPRKEFKHHNKSKDYDENGFVLSFDEKYREKVMKKYIPHILSTYETIKAGNRTLKIHSMQSGPWKQSDLTHPASFDSIALDPDLKKSIIDDLDRFLRRKKLYQKVGKPWKRGYLLYGPPGTGKSSLIAAIAKHLKFDVYDLDLSSVFSNSELMRAMRETSNRSIVVFEDIDCNTEVLDRSKSDKFSDNDFVDTPGGGKMVRNMPMPMPRKFTLSGLLNYMDGLWSSCGEERILIFTTNHKDKVDSALLRPGRMDMHIHLSFLKGKAFRILASNYLDIEEQHGPLIEQIEELLGKVDVTPAVAAEYLLRSEDPSVALEALVQFLQEIDVSKVVVNEENNQKV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06754 489 Gene3D - 406 477 - -
Vifa1g06754 489 SMART AAA_5 257 411 IPR003593 GO:0016887
Vifa1g06754 489 ProSitePatterns AAA-protein family signature. 379 397 IPR003960 GO:0005524|GO:0016887
Vifa1g06754 489 Gene3D - 214 405 IPR027417 -
Vifa1g06754 489 Pfam ATPase family associated with various cellular activities (AAA) 262 321 IPR003959 GO:0005524|GO:0016887
Vifa1g06754 489 Pfam ATPase family associated with various cellular activities (AAA) 360 407 IPR003959 GO:0005524|GO:0016887
Vifa1g06754 489 Pfam Domain associated at C-terminal with AAA 44 138 IPR025753 -
Vifa1g06754 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 459 IPR027417 -
Vifa1g06754 489 PANTHER BCS1 AAA-TYPE ATPASE 27 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06754 Vifa-Chr1 1043541264 1043542902 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06754 231 407 Calmodulin-binding Proteins AT3G56690 25.946 2.87e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06754 - K08900 gmx:100787726 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06754 1 1043541264 1043542902 Vifa1g06754 1 1043541264 1043542902 ECH