Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06746 ATGGCAAAATCTATACCAAAAATTGGTTCACGTAAAACTGGACGTATTGGTTCGCGTAAGCATCCTCGTAAAATACCAAAGGGGGTTATTTATATTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATGTAAGAGGTCGGGTGATTTCTTGGTCCTCCGCCGGTTCATGTGGATTCAAGGGTACACGAAGGGGGACACCATTTGCCGCTCTAACCGCAGCGGGAAATGCTATTCAAACAGTAGTCGATCAAGGAATGCAACGAGCAGACGTCATGATAAAAGGTCCCGGTCTAGGAAGAGAGGCGGCATTAAGAGTATTTGAACTTTTGAATAAGACTCAAGAAGACCTTCTGAAAATTGAACATTTTCGCGTAGAAGATTTACAAAATATATTATTCAACTTTTTACAAATCGAAAAGCATTTTTTATAA 438 0.3973 MAKSIPKIGSRKTGRIGSRKHPRKIPKGVIYIQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAALTAAGNAIQTVVDQGMQRADVMIKGPGLGREAALRVFELLNKTQEDLLKIEHFRVEDLQNILFNFLQIEKHFL 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06746 145 Hamap 30S ribosomal protein S11 [rpsK]. 11 135 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vifa1g06746 145 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g06746 145 SUPERFAMILY Translational machinery components 24 111 - -
Vifa1g06746 145 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 27 111 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vifa1g06746 145 Pfam Ribosomal protein S11 28 109 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vifa1g06746 145 Gene3D Ribosomal protein S11 12 142 IPR036967 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06746 Vifa-Chr1 1042416322 1042417822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06746 28 109 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 34.066 2.22e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06746 K02948 - csin:14412458 189.889