Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06745 ATGGCGATACATTTATCCAAAACTTCTAGCCCGAACACACGCAATGGAGCCGTAAACAGTCAAGTGAAATCCAATTCACGAAATCGTTTGATTTCTGGACAGCATCATTGTGGTAAAGGGCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGCAATGAAAAAGACATATATGGTAGAATTGTAACTATCGAATACGACCCTAATCGAAATGCACACATTTGTCTCATACACTATGGGGATGTTTGGGAAGGGGTTTTGATTGATCAAAAAGACGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCAGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGAGCTAAACGGAGGGCCCCAATTGGTAGAAAAAAACCCTCAACTCCTTGGGGGTATCCTGCACTTGGAAGAAGAACTAGAAAAAGGAAGAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTCAATAG 693 0.4271 MAIHLSKTSSPNTRNGAVNSQVKSNSRNRLISGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAHICLIHYGDVWEGVLIDQKDESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAKRRAPIGRKKPSTPWGYPALGRRTRKRKKYSDNLILRRRSQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06745 230 Pfam Ribosomal Proteins L2, RNA binding domain 40 96 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vifa1g06745 230 SUPERFAMILY Translation proteins SH3-like domain 113 227 IPR008991 -
Vifa1g06745 230 Gene3D - 1 103 IPR012340 -
Vifa1g06745 230 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 13 106 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g06745 230 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 190 230 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g06745 230 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 110 195 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g06745 230 FunFam 50S ribosomal protein L2, chloroplastic 100 175 - -
Vifa1g06745 230 SUPERFAMILY Nucleic acid-binding proteins 3 96 IPR012340 -
Vifa1g06745 230 MobiDBLite consensus disorder prediction 183 230 - -
Vifa1g06745 230 Gene3D - 104 176 IPR014722 -
Vifa1g06745 230 SMART Ribosomal_L2_2 40 109 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g06745 230 Pfam Ribosomal Proteins L2, C-terminal domain 113 193 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g06745 230 MobiDBLite consensus disorder prediction 1 28 - -
Vifa1g06745 230 FunFam 50S ribosomal protein L2, chloroplastic 1 106 - -
Vifa1g06745 230 PANTHER RIBOSOMAL PROTEIN L2 32 229 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g06745 230 Gene3D Ribosomal protein L2, domain 3 187 229 IPR014726 -
Vifa1g06745 230 SMART Ribosomal_L2_C_2 113 207 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06745 Vifa-Chr1 1042409509 1042411038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06745 51 188 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 27.711 3.13e-10 57.0