Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06742 ATGACAATAACTCCTCCTCCTTCTGATACTGAGCAATTATTAGGAAATAATAGAATTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAAATAGAGGAATGGAAGTGATTGACACGGGAGTTGCTCTAAGTGTTCCAGTCGGTGGAGCAACCCTAGGTCGAATTTTCAACGTGCTTGGAGAGCCTATTGATAATTTGGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCTGCCTTTATACAGTTAGATACACAATTATCCATTTTTGAAACAGGAATTAAAGTAGTCGATCTTTTAGCTCCTTATCGCCGTGGCGGAAAAATAGGACTTTTCGGTGGAGCTGGGGTAGGTAAAACAGTTCTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCCGTATTTGGCGGAGTAGGTGAGCGTACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCCGGAGTAATTAATGAAAAAAATATTGCGGAATCAAAAGTAGCTCTAGTCTACGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCAGAATATTTCCGAGATGTCAATGAGCAGGACGTCCTTCTATTTATCGACAATATCTTTCGTTTTGTCCAAGCCGGATCCGAAGTATCCGCCTTATTGGGCCGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTGGGTACTGAAATGGGTACTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCTATAAATTATATTCAAGCAGTTTATGTACCTGCAGATGATTTGACTGATCCTGCTCCTGCCACGACATTTGCACATTTGGATGCAACTACTGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACCATGCTCCAACCTCGCATCGTCGGTGAAGAACATTATGAAACTGCGCAAAGAGTGAAACAAACGTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATTCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAACGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACCGGTTCCCCAGGGAAATATGTTGGTCTAGCAGAAACAATTCGAGGATTTAAATTGATTCTTTCTGGAGAATTAGATAGTCTTCCTGAACAAGCCTTTTATTTGGTGGGTAATATCGATGAAGCTACTGCGAAGGCTACGAACTTAACTTAG 1311 0.4142 MTITPPPSDTEQLLGNNRIRAVAMSATDGLNRGMEVIDTGVALSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTQLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTEMGTLQERITSTKEGSINYIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDSLPEQAFYLVGNIDEATAKATNLT 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06742 436 Gene3D - 320 436 IPR024034 -
Vifa1g06742 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 322 IPR027417 -
Vifa1g06742 436 NCBIfam F0F1 ATP synthase subunit beta 10 435 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vifa1g06742 436 Gene3D - 43 319 IPR027417 -
Vifa1g06742 436 SMART AAA_5 109 301 IPR003593 GO:0016887
Vifa1g06742 436 Hamap ATP synthase subunit beta [atpB]. 1 435 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vifa1g06742 436 FunFam ATP synthase subunit beta 24 369 - -
Vifa1g06742 436 FunFam ATP synthase subunit beta 320 436 - -
Vifa1g06742 436 FunFam ATP synthase subunit beta 43 319 - -
Vifa1g06742 436 CDD ATP-synt_F1_beta_C 324 431 - -
Vifa1g06742 436 ProSitePatterns ATP synthase alpha and beta subunits signature. 308 317 IPR020003 GO:0005524
Vifa1g06742 436 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 97 317 IPR000194 GO:0005524
Vifa1g06742 436 CDD F1-ATPase_beta_CD 44 322 - -
Vifa1g06742 436 PANTHER ATP SYNTHASE 10 435 - -
Vifa1g06742 436 Pfam ATP synthase alpha/beta family, beta-barrel domain 12 40 IPR004100 GO:0046034|GO:1902600
Vifa1g06742 436 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 320 434 - -
Vifa1g06742 436 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 9 40 IPR036121 GO:0046034|GO:1902600
Vifa1g06742 436 Gene3D - 8 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06742 Vifa-Chr1 1042387746 1042389221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06742 31 374 Primary Pumps ATPases(2) AT1G20260 27.005 3.41e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06742 K02112 - mnt:24286633 803.512