LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g06739	ATGCCCTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCAGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGCAGAGCCGGAGCTAAACGTTGGCGAGGCAAGCGTCCTGTAGTAAGAGGGGTAGTTATGAACCCTGTAGACCATCCACATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCTCAACTCCTTGGGGGTATCCTGCACTTGGAAGAAGAACTAGAAAAAGGAAGAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTCAATAG	429	0.4615	MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAKRWRGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRTRKRKKYSDNLILRRRSQ	142

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g06739	142	SMART	Ribosomal_L2_C_2	1	119	IPR022669	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g06739	142	FunFam	50S ribosomal protein L2	1	61	-	-
	Vifa1g06739	142	Pfam	Ribosomal Proteins L2, C-terminal domain	1	117	IPR022669	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g06739	142	SUPERFAMILY	Translation proteins SH3-like domain	1	139	IPR008991	-
	Vifa1g06739	142	NCBIfam	50S ribosomal protein L2	1	141	IPR005880	GO:0003723\|GO:0003735\|GO:0006412\|GO:0015934\|GO:0016740
	Vifa1g06739	142	Gene3D	Ribosomal protein L2, domain 3	63	141	IPR014726	-
	Vifa1g06739	142	PANTHER	RIBOSOMAL PROTEIN L2	1	141	IPR002171	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g06739	142	ProSitePatterns	Ribosomal protein L2 signature.	84	95	IPR022671	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g06739	142	Gene3D	-	1	62	IPR014722	-
	Vifa1g06739	142	FunFam	50S ribosomal protein L2	62	142	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g06739	Vifa-Chr1	1042374636	1042375064	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g06739	1	101	Cytoplasmic Ribosomal Protein Gene Family	AT3G51190	46.296	2.93e-21	84.7

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g06739	K02886		-	sly:16976780	263.077

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