Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06739 ATGCCCTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCAGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGCAGAGCCGGAGCTAAACGTTGGCGAGGCAAGCGTCCTGTAGTAAGAGGGGTAGTTATGAACCCTGTAGACCATCCACATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCTCAACTCCTTGGGGGTATCCTGCACTTGGAAGAAGAACTAGAAAAAGGAAGAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTCAATAG 429 0.4615 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAKRWRGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRTRKRKKYSDNLILRRRSQ 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06739 142 SMART Ribosomal_L2_C_2 1 119 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g06739 142 FunFam 50S ribosomal protein L2 1 61 - -
Vifa1g06739 142 Pfam Ribosomal Proteins L2, C-terminal domain 1 117 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g06739 142 SUPERFAMILY Translation proteins SH3-like domain 1 139 IPR008991 -
Vifa1g06739 142 NCBIfam 50S ribosomal protein L2 1 141 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vifa1g06739 142 Gene3D Ribosomal protein L2, domain 3 63 141 IPR014726 -
Vifa1g06739 142 PANTHER RIBOSOMAL PROTEIN L2 1 141 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g06739 142 ProSitePatterns Ribosomal protein L2 signature. 84 95 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vifa1g06739 142 Gene3D - 1 62 IPR014722 -
Vifa1g06739 142 FunFam 50S ribosomal protein L2 62 142 - -
Vifa1g06739 142 MobiDBLite consensus disorder prediction 90 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06739 Vifa-Chr1 1042374636 1042375064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06739 1 101 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 46.296 2.93e-21 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06739 K02886 - sly:16976780 263.077