Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06726 ATGTTGGTGAACCATATTATGAAACACGGAAAAAAATCATTGGCGTATCTAATTATCTATCGAGCTCTGAAAAGGATTCAACAAAAGACAAAAACAAATCCACTATACGTTTTACGTCAAGCAATACGTGGGGTAACTCCCAATATAGGAGTTAAAGCAAGACGCGTGAGCGAATCGACTCATCAAGTTCCCATTGAAATAGGATCGACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGCGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGTGATGCCATACGCAAAAAGGAAGAGACTCAGAGAATGGCGGAGGCAAATAGAATTCTTTCACATTTTCGTTAA 396 0.4091 MLVNHIMKHGKKSLAYLIIYRALKRIQQKTKTNPLYVLRQAIRGVTPNIGVKARRVSESTHQVPIEIGSTQGKALAIRWLLAASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETQRMAEANRILSHFR 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06726 131 Gene3D Ribosomal protein S7 domain 1 131 IPR036823 -
Vifa1g06726 131 PANTHER RIBOSOMAL PROTEIN S7 2 125 IPR000235 GO:0006412
Vifa1g06726 131 Pfam Ribosomal protein S7p/S5e 2 125 IPR023798 -
Vifa1g06726 131 NCBIfam 30S ribosomal protein S7 1 131 IPR005717 GO:0003735|GO:0006412|GO:0015935
Vifa1g06726 131 CDD uS7_Chloroplast 1 130 - -
Vifa1g06726 131 FunFam 30S ribosomal protein S7 1 131 - -
Vifa1g06726 131 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 1 131 IPR000235 GO:0006412
Vifa1g06726 131 SUPERFAMILY Ribosomal protein S7 1 125 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06726 Vifa-Chr1 1042322016 1042322411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06726 2 125 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 33.333 2.85e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06726 K02992 - cpap:5878398 226.098