Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06711 ATGGTATCTAGGGGTACCAATTTTGTTTTAGCCATTATGATTACCATAATATCTACTCCAATACATAGTTTTGCCAAACAATCCAAGTCATTAGAATTGAAAATGAACATGATTGATCAATGTTGGAAACTAAATCCTGAATGGAGAAAATATAGACAACAACTAGCTACTTGCTCTGTTGGTTATGTTGGAAAGATGAAAAATAACACCGGTAAGGATCTTATCCATTATAAAGTTATTGATTCAAATGATGATCCCATAAGTCCCAAACCTGGAACATTGAGATATGGAGCTTCAGTAATTCAAGGTAAAGTGTGGATCACATTCCAAAAAAATATGAACATTAGACTAATGAAACCTCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGTGGCGTCAACGTGCATATTGCTAATAATGCATGCTTAATGATATTCAAGGCCACCAACATAATAATTCATAGCATTCGAATTCATCATTGCAAAGCTCAAGTCCCGGGGATGGTGATGGGGCCAAATGGAAAGGTTATTTCTTTGGGCCAAGTAGATGGAGATGCAATTAGATTGGTCACTGCTTCAAAAATTTGGATTGATCATAATACGCTTTATAATTGTGAAGATGGTCTTCTTGATGTCACACGAGGCTCTACTGATGTGACTATTTCCAATAATTGGTTTAGAGAACAAGATAAAGTTATGCTTCTTGGACATGATGATGGATATGTAAGGGACCTAAACATGAAGGTTACCGTGGTGTACAATCATTTTGGACCTAATTGTAACCAACGAATGCCAAGGATTCGTCATGGATATGCACATGTTGCCAACAATATTTATTTGGGTTGGATGCAATATGCCATTGGTGGAAGTATGGGGCCTAGCCTCAAAAGTGAAGCTAACCTCTTCGTAGCACCAAGAGATGGGAGTAAAGAGGTAACATGGAGAAATAATGGTCGTACAAATGGAGACAAATGGGAGTTTCATTCAAAAGGGGATGCATTTAAAAATGGAGCTTCATTTACAGTAACACAAGGAGGACGTGTGCCAAAGCCTAATTATAATAAAGAACAAAGTTTTAAAGTAGTTGATGTGAAATTTGTTCATGCATTGACAAGATTATCAGGTGCTTTTCAATGTAGTAGAACCTCTATATGTTAA 1161 0.3669 MVSRGTNFVLAIMITIISTPIHSFAKQSKSLELKMNMIDQCWKLNPEWRKYRQQLATCSVGYVGKMKNNTGKDLIHYKVIDSNDDPISPKPGTLRYGASVIQGKVWITFQKNMNIRLMKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHSIRIHHCKAQVPGMVMGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLYNCEDGLLDVTRGSTDVTISNNWFREQDKVMLLGHDDGYVRDLNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNIYLGWMQYAIGGSMGPSLKSEANLFVAPRDGSKEVTWRNNGRTNGDKWEFHSKGDAFKNGASFTVTQGGRVPKPNYNKEQSFKVVDVKFVHALTRLSGAFQCSRTSIC 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06711 386 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Vifa1g06711 386 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Vifa1g06711 386 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Vifa1g06711 386 PRINTS Pollen allergen Amb family signature 83 108 IPR018082 -
Vifa1g06711 386 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Vifa1g06711 386 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Vifa1g06711 386 PRINTS Pollen allergen Amb family signature 357 380 IPR018082 -
Vifa1g06711 386 PANTHER PECTATE LYASE 18-RELATED 22 382 IPR045032 GO:0030570
Vifa1g06711 386 Pfam Pectate lyase 123 303 IPR002022 -
Vifa1g06711 386 SMART amb_all 112 309 IPR002022 -
Vifa1g06711 386 Gene3D - 35 379 IPR012334 -
Vifa1g06711 386 SUPERFAMILY Pectin lyase-like 34 359 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06711 Vifa-Chr1 1040615549 1040617130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06711 66 313 Polysaccharide Lyase AT5G09280 71.371 1.77e-140 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06711 K01728 - gmx:100780437 648.277