Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g06710 | ATGGCTGGTATTTTTTCATTAGGAGGAACTAGTGGAGTGAGGTGTGAGGAAGACGATAATCCAGACAATATCAATAACCCTATCAATATCAATCCACCACCACCGGAATTCTGGTACAATACCAATACCGGCAACAAACCCGATGATCCTGTTGGCGGATACCGTAGTTTTGAGATTTGGAACCAGCAGCAACAACAGCACCAGTTTTTGCCTATGCAGCAAGATCTTTACACTGGTGTTGCGTTAGGAGTGGGGCCAAGTAGGGTTTTATCTTCTGATGATAATAGATCTGCGTTTGTGGTGGCTTCTGGAAGCGTTGGAGGGATCAGCTGTCAAGATTGTGGGAATCAGGCGAAGAAAGATTGTCCTCATGCTCGCTGTAGGACATGCTGTAAGAGTAGAGGCTTTGATTGTCAAACTCATGTCAAGAGTACTTGGGTTCCTGCTGCAAGAAGAAGAGAGAGACAACAGCAGCAACAACAACAACTTGCTGCTCCCAAACCACAATACCGAGATATTGTTACTGAAAACAGACAGAGAGATCTTAACAACAACCAAATCCCTAATAATTCTGCTCTAGCTTGTGCTCGTTTACCTTCAAACCCTCTCCCTACAGCAGGATTAGTAGAGGAGGTGAATTTTCCGGCTGTGGTGAACTCTTCGGCGGAGTTTCGGTGCGTGCGAGTTACTTCCGTTGATGATTCTGAGGAGGAGATTGCATATTCAACTGCTGTGAACATTAGCGGGCATGTTTTCAGAGGAATTTTGTATAATTATGGTGCAGATATGAATAACAACTACATCTCCGCCGGAAACACCCCTCCTAGCGGTGGTGAAGCGGCGGCACTGCCGTTGAATCTGGTATCATCTGTCCCTGGGGAACTTGTTGATCCTGCTTCTATGTATCCAGCTCCACTTAGCACTTTCATGCCTCCTAGTGGTACGCAATTCTTCCCCAACCCAAGATCTTGA | 972 | 0.4599 | MAGIFSLGGTSGVRCEEDDNPDNINNPININPPPPEFWYNTNTGNKPDDPVGGYRSFEIWNQQQQQHQFLPMQQDLYTGVALGVGPSRVLSSDDNRSAFVVASGSVGGISCQDCGNQAKKDCPHARCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQQQQLAAPKPQYRDIVTENRQRDLNNNQIPNNSALACARLPSNPLPTAGLVEEVNFPAVVNSSAEFRCVRVTSVDDSEEEIAYSTAVNISGHVFRGILYNYGADMNNNYISAGNTPPSGGEAAALPLNLVSSVPGELVDPASMYPAPLSTFMPPSGTQFFPNPRS | 323 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g06710 | 323 | NCBIfam | LRP1 C-terminal domain | 214 | 260 | IPR006511 | - | |
Vifa1g06710 | 323 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 27 | 307 | IPR007818 | GO:0003700|GO:0006355 | |
Vifa1g06710 | 323 | Pfam | Domain of unknown function (DUF702) | 108 | 262 | - | - | |
Vifa1g06710 | 323 | NCBIfam | putative zinc finger domain, LRP1 type | 110 | 152 | IPR006510 | - | |
Vifa1g06710 | 323 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g06710 | Vifa-Chr1 | 1040229165 | 1040230678 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g06710 | 1 | 323 | C2H2 Transcription Factor Family | AT3G51060 | 39.744 | 1.24e-70 | 222 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SRS | Vifa1g06710 | DUF702 | 7.5e-60 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g06710 | - | - | gmx:100814589 | 299.671 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa2g04461 | 2 | 1308201137 | 1308202335 | Vifa1g06710 | 1 | 1040229165 | 1040230678 | ECH | |
Vifa1g06710 | 1 | 1040229165 | 1040230678 | Vifa1g06710 | 1 | 1040229165 | 1040230678 | ECH |