Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06710 ATGGCTGGTATTTTTTCATTAGGAGGAACTAGTGGAGTGAGGTGTGAGGAAGACGATAATCCAGACAATATCAATAACCCTATCAATATCAATCCACCACCACCGGAATTCTGGTACAATACCAATACCGGCAACAAACCCGATGATCCTGTTGGCGGATACCGTAGTTTTGAGATTTGGAACCAGCAGCAACAACAGCACCAGTTTTTGCCTATGCAGCAAGATCTTTACACTGGTGTTGCGTTAGGAGTGGGGCCAAGTAGGGTTTTATCTTCTGATGATAATAGATCTGCGTTTGTGGTGGCTTCTGGAAGCGTTGGAGGGATCAGCTGTCAAGATTGTGGGAATCAGGCGAAGAAAGATTGTCCTCATGCTCGCTGTAGGACATGCTGTAAGAGTAGAGGCTTTGATTGTCAAACTCATGTCAAGAGTACTTGGGTTCCTGCTGCAAGAAGAAGAGAGAGACAACAGCAGCAACAACAACAACTTGCTGCTCCCAAACCACAATACCGAGATATTGTTACTGAAAACAGACAGAGAGATCTTAACAACAACCAAATCCCTAATAATTCTGCTCTAGCTTGTGCTCGTTTACCTTCAAACCCTCTCCCTACAGCAGGATTAGTAGAGGAGGTGAATTTTCCGGCTGTGGTGAACTCTTCGGCGGAGTTTCGGTGCGTGCGAGTTACTTCCGTTGATGATTCTGAGGAGGAGATTGCATATTCAACTGCTGTGAACATTAGCGGGCATGTTTTCAGAGGAATTTTGTATAATTATGGTGCAGATATGAATAACAACTACATCTCCGCCGGAAACACCCCTCCTAGCGGTGGTGAAGCGGCGGCACTGCCGTTGAATCTGGTATCATCTGTCCCTGGGGAACTTGTTGATCCTGCTTCTATGTATCCAGCTCCACTTAGCACTTTCATGCCTCCTAGTGGTACGCAATTCTTCCCCAACCCAAGATCTTGA 972 0.4599 MAGIFSLGGTSGVRCEEDDNPDNINNPININPPPPEFWYNTNTGNKPDDPVGGYRSFEIWNQQQQQHQFLPMQQDLYTGVALGVGPSRVLSSDDNRSAFVVASGSVGGISCQDCGNQAKKDCPHARCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQQQQLAAPKPQYRDIVTENRQRDLNNNQIPNNSALACARLPSNPLPTAGLVEEVNFPAVVNSSAEFRCVRVTSVDDSEEEIAYSTAVNISGHVFRGILYNYGADMNNNYISAGNTPPSGGEAAALPLNLVSSVPGELVDPASMYPAPLSTFMPPSGTQFFPNPRS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06710 323 NCBIfam LRP1 C-terminal domain 214 260 IPR006511 -
Vifa1g06710 323 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 27 307 IPR007818 GO:0003700|GO:0006355
Vifa1g06710 323 Pfam Domain of unknown function (DUF702) 108 262 - -
Vifa1g06710 323 NCBIfam putative zinc finger domain, LRP1 type 110 152 IPR006510 -
Vifa1g06710 323 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06710 Vifa-Chr1 1040229165 1040230678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06710 1 323 C2H2 Transcription Factor Family AT3G51060 39.744 1.24e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vifa1g06710 DUF702 7.5e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06710 - - gmx:100814589 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04461 2 1308201137 1308202335 Vifa1g06710 1 1040229165 1040230678 ECH
Vifa1g06710 1 1040229165 1040230678 Vifa1g06710 1 1040229165 1040230678 ECH