Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06692 ATGGAATGGTTTATAGGTGTATGTGTGGGAATATCGTTTATGAGTTGGTGGTTTTTGATGAAGAAGAAGAAGAATAATGAAAAAATTCCAAAAGGGAATTCAGGTTGGCCTTTAATTGGAGAAACTCTTGATTTCATTGCTTCATGTTATTCTTCTCGCCCTGTCACCTTCATGGAAAATCGCAAGTCTATCTATGGGGATGTGTTTAAGACAAACATTTTGGGAAGCAATTTGATCATTTCAACAGACCCAGAAGTGAACAAGGTGATTCTGCATAATCAAAAGAACATTTTCATCCCTGCTTATCCAAAATCAATTAGAGAATTAATGGGAGAACACTCTATACTCCAACTGAACGGTATTAAGCATAAGAAACTGCATTCACTCATTGCAGTGTTTCTTAAATCTCCACAATTTAAAGCAAGAATCACCACAGACATTGAACATTCTGTCAAACAGTGCTTAGCTTCTTGGACCAACAAAACAATATACATTCAAGATGAAGTAAAAAAGATTACATTTCCAATTTTGAATAAAGTTCTGATGAGTGTTGGTCCTGGTGAAGATTTGGACTTGTTGAAAAGAGAATTTGAAGCATTCATCAAAGGGTTGATTTGCTTGCCCATCAAGTTTCCAGGAACAACACTATACAAATCCTTGAAGGCAAAGGAAAGGATGATGAAGTTGGTGAGGAAGATAGTGGAGGAAAGAAAGAAGCAAATAATGGATAGTAATGAAGTGAATGATGTTGTGGATGTACTATTAAGGGGCAAGGATGAGTTATCCCAATCTAGCTCAAGTTCAAACTTGGAGTTGGAAATGATTAGCCAAAACATCATAGAGATGATGATTCCAGGGGAAGAGACCCTTCCTACAGCCATGACATTGGCCCTTAAATTCCTATCTGATTCACCTCTTGCTCTATCCAAACTTATGGAGGAGAACATGGAACTGAAGAAGCAGAAGACGGATAACTCAGAAGATTATACATGGACTGACTACATGTCACTACCATTTACTCAAAATGTCATCAGTGAAACACTTAGAATGGCCAATATAGTCAATGGAATTTGGAGGAAAGCAGTCCAAAACGTAAAAATTAAAGGGTACCTAATTCCAAAGGATTGGAGTGTTATGGCATGTCTTATCACTGTTCACTTGGACTCAAAGAACTATGAAAACCCTTTTAAGTTTGATCCATGGAGATGGGAGAAAATTGAAGTTTTGGCTAGTAACATCCGCTTTGCCCCATTTGGTGGTGGACATAGACTATGCCCTGGGTTAGAACTTTCTAGGCTAGAGCTCTCTATTTTCTTTCACCATCTTGTTACTACATACAGATGGGTCGCTGAGAACGATGAAATAGTATATTTTCCAACTGTTAAGATGAAGAAGAAGCTCCCAATTAGAGTTCAACCCATTAACTCTTGA 1431 0.3767 MEWFIGVCVGISFMSWWFLMKKKKNNEKIPKGNSGWPLIGETLDFIASCYSSRPVTFMENRKSIYGDVFKTNILGSNLIISTDPEVNKVILHNQKNIFIPAYPKSIRELMGEHSILQLNGIKHKKLHSLIAVFLKSPQFKARITTDIEHSVKQCLASWTNKTIYIQDEVKKITFPILNKVLMSVGPGEDLDLLKREFEAFIKGLICLPIKFPGTTLYKSLKAKERMMKLVRKIVEERKKQIMDSNEVNDVVDVLLRGKDELSQSSSSSNLELEMISQNIIEMMIPGEETLPTAMTLALKFLSDSPLALSKLMEENMELKKQKTDNSEDYTWTDYMSLPFTQNVISETLRMANIVNGIWRKAVQNVKIKGYLIPKDWSVMACLITVHLDSKNYENPFKFDPWRWEKIEVLASNIRFAPFGGGHRLCPGLELSRLELSIFFHHLVTTYRWVAENDEIVYFPTVKMKKKLPIRVQPINS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06692 476 Coils Coil 308 328 - -
Vifa1g06692 476 CDD CYP90-like 61 473 - -
Vifa1g06692 476 PRINTS P450 superfamily signature 416 425 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06692 476 PRINTS P450 superfamily signature 425 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06692 476 PRINTS P450 superfamily signature 342 353 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06692 476 PRINTS P450 superfamily signature 285 302 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06692 476 PRINTS E-class P450 group IV signature 409 425 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06692 476 PRINTS E-class P450 group IV signature 425 443 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06692 476 PRINTS E-class P450 group IV signature 56 79 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06692 476 PRINTS E-class P450 group IV signature 386 404 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06692 476 PRINTS E-class P450 group IV signature 337 353 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06692 476 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 418 427 IPR017972 GO:0005506|GO:0016705
Vifa1g06692 476 PANTHER CYTOCHROME P450 26 26 456 - -
Vifa1g06692 476 FunFam 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 19 474 - -
Vifa1g06692 476 SUPERFAMILY Cytochrome P450 25 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06692 476 Gene3D Cytochrome P450 19 474 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06692 476 Pfam Cytochrome P450 30 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06692 Vifa-Chr1 1038088111 1038092604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06692 29 369 Cytochrome P450 AT4G36380 65.015 2.41e-159 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06692 K12637 - gmx:100799030 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06692 1 1038088111 1038092604 Vifa1g06692 1 1038088111 1038092604 ECH