Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06684 ATGACAACCGTTCGATATGGCGATCTCGTTCCTAATAGTACTATAGCGAAACTACTTGCTTGCCTTTATGTCTACACTGGTATGGCTCTTGGTGGCTTGATTCTTAGTAAAGCAGCAGATTACATTGTTGAAAAACAAGAAGTGTATCTTGTTAAAGCAATATGCAAAGCCGAGAAACTCGGTCTAGAAGAGGTTTCTAAAGAAATTGTGACTAAGAAAAGCAAATACAAGTTTCTGCTTTCAATATCCACTTTTGTTGTACTCATGATTACAGGAACTGTTTTTCTGTATTTTGTTGAGAAACTAGATTTCTTCGATGAATTCTATTGTGTTTGTTCGACGGTTACGACTTTAGGTTACGGAGATAAGAGCTTCTCAACTCCTATTGGTAGGACTTTTGCTGTGTTTTGGATATTAAGCAGCACCATTTGCTTAGCTCAGTGTTTTGCATATCTTGCTGATTTTTATACGGAAGATAGACAAAGATCATTGGCGAAAATGGTTCTCACGCGAAATTTTTATATGCATCATTCACTGGGATTGTATACTTTTCTTAATTTGTCGCGTATAATCAACGACAACAACAACAACACCAACACAGACATGTCTATAGCAGCGACCTCCTCACAAAATCATCAATTGTAA 645 0.369 MTTVRYGDLVPNSTIAKLLACLYVYTGMALGGLILSKAADYIVEKQEVYLVKAICKAEKLGLEEVSKEIVTKKSKYKFLLSISTFVVLMITGTVFLYFVEKLDFFDEFYCVCSTVTTLGYGDKSFSTPIGRTFAVFWILSSTICLAQCFAYLADFYTEDRQRSLAKMVLTRNFYMHHSLGLYTFLNLSRIINDNNNNTNTDMSIAATSSQNHQL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06684 214 Gene3D - 59 163 - -
Vifa1g06684 214 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 1 172 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa1g06684 214 Pfam Ion channel 1 43 IPR013099 -
Vifa1g06684 214 Pfam Ion channel 85 157 IPR013099 -
Vifa1g06684 214 Gene3D - 1 48 - -
Vifa1g06684 214 SUPERFAMILY Voltage-gated potassium channels 71 181 - -
Vifa1g06684 214 SUPERFAMILY Voltage-gated potassium channels 1 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06684 Vifa-Chr1 1035806350 1035806994 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06684 1 172 Ion Channels AT5G55630 57.558 4.31e-64 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06684 K05389 - gmx:100799492 263.462