LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g06684	ATGACAACCGTTCGATATGGCGATCTCGTTCCTAATAGTACTATAGCGAAACTACTTGCTTGCCTTTATGTCTACACTGGTATGGCTCTTGGTGGCTTGATTCTTAGTAAAGCAGCAGATTACATTGTTGAAAAACAAGAAGTGTATCTTGTTAAAGCAATATGCAAAGCCGAGAAACTCGGTCTAGAAGAGGTTTCTAAAGAAATTGTGACTAAGAAAAGCAAATACAAGTTTCTGCTTTCAATATCCACTTTTGTTGTACTCATGATTACAGGAACTGTTTTTCTGTATTTTGTTGAGAAACTAGATTTCTTCGATGAATTCTATTGTGTTTGTTCGACGGTTACGACTTTAGGTTACGGAGATAAGAGCTTCTCAACTCCTATTGGTAGGACTTTTGCTGTGTTTTGGATATTAAGCAGCACCATTTGCTTAGCTCAGTGTTTTGCATATCTTGCTGATTTTTATACGGAAGATAGACAAAGATCATTGGCGAAAATGGTTCTCACGCGAAATTTTTATATGCATCATTCACTGGGATTGTATACTTTTCTTAATTTGTCGCGTATAATCAACGACAACAACAACAACACCAACACAGACATGTCTATAGCAGCGACCTCCTCACAAAATCATCAATTGTAA	645	0.369	MTTVRYGDLVPNSTIAKLLACLYVYTGMALGGLILSKAADYIVEKQEVYLVKAICKAEKLGLEEVSKEIVTKKSKYKFLLSISTFVVLMITGTVFLYFVEKLDFFDEFYCVCSTVTTLGYGDKSFSTPIGRTFAVFWILSSTICLAQCFAYLADFYTEDRQRSLAKMVLTRNFYMHHSLGLYTFLNLSRIINDNNNNTNTDMSIAATSSQNHQL	214

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g06684	214	Gene3D	-	59	163	-	-
	Vifa1g06684	214	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	1	172	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Vifa1g06684	214	Pfam	Ion channel	1	43	IPR013099	-
	Vifa1g06684	214	Pfam	Ion channel	85	157	IPR013099	-
	Vifa1g06684	214	Gene3D	-	1	48	-	-
	Vifa1g06684	214	SUPERFAMILY	Voltage-gated potassium channels	71	181	-	-
	Vifa1g06684	214	SUPERFAMILY	Voltage-gated potassium channels	1	47	-	-

Showing 1 to 7 of 7 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g06684	Vifa-Chr1	1035806350	1035806994	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g06684	1	172	Ion Channels	AT5G55630	57.558	4.31e-64	201

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g06684	K05389		-	gmx:100799492	263.462

Showing 1 to 1 of 1 entries