Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06681 ATGATGAAGATACTAACATGTGGAGTGGAGGAATGTGATAGGCGTTGGGATGTCTCTACTGATGACGAAGAAGTGATTATAAGTATTTGTAAACCCAATACATTACTATTGTTCAATAGAGAAACAAAGGTTGAGAGATTTATTGAAGAAAACCAGCCATTAACTTCTTTTTCCTTATCAAAGGATAACAATCACAGCAACCTCGTACGATGCCGAGCATACTTAGGTACAGGCACCTTATGTTTCTTTCTGGCAAGTTACCAAATTCAAGGCATAAAAACATATGGTTTTCTTGATGCTCTTTATTTCTGTGTCGTCATGATGACAACCGTTGGATATGGCGATCTCGTTCGTAATAGTACTATAGCGAAACTACTTGCTTGCCTTTATGTCTACACTGGTATGGCTCTTGGTGGCTTGATTCTTAGCAAAGCAGCAGATTACATTGTTGAAAAATAG 459 0.3791 MMKILTCGVEECDRRWDVSTDDEEVIISICKPNTLLLFNRETKVERFIEENQPLTSFSLSKDNNHSNLVRCRAYLGTGTLCFFLASYQIQGIKTYGFLDALYFCVVMMTTVGYGDLVRNSTIAKLLACLYVYTGMALGGLILSKAADYIVEK 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06681 152 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 68 149 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa1g06681 152 Pfam Ion channel 76 150 IPR013099 -
Vifa1g06681 152 SUPERFAMILY Voltage-gated potassium channels 69 150 - -
Vifa1g06681 152 Gene3D - 65 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06681 Vifa-Chr1 1035657405 1035658764 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06681 37 152 Ion Channels AT5G55630 48.276 6.27e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06681 K05389 - gmx:100799492 132.88