Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06679 ATGGGTCGTGGGAAGATAGAGATAAAGTTGATTGAGAATCCAACAAACAGGCAAGTGACATACTCAAAGAGAAGGAATGGTATATTCAAGAAAGCTCATGAACTTAGTGTTCTTTGTGATGCTAAGGTCTCACTCATCATGTTCTCCAAAAACAACAAGATGCATGAATACATCACTCCTGGACTTTCTACAAAGAAGATCATTGATCAGTATCAGAAGACTTTGGGTGATATTGATCTGTGGCGTTCTCACTATGAGAAAATGCTTGAGAACTTGAAGAAACTGAAGGATATTAACAATAAACTAAGAAGACAGATCAGGCATAGAATAGGTGAAGGTGGTTTGGAATTGGATGATCTGAGTTTCCAGCAACTGAGAAGTCTTGAAGAAGATATGGTTTCTTCCATTGCCAAAATACGTGATAGGAAGTTTCATGTGATCAAAACTAGGACTGATACATGTAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAATGGAAACCTCCTTCTTGAACTAAAGGAAAAGTGTGTGATCCATCCACAATTTCTTTTCCATGATGAAGGAGAGGAGGAATCAGCAGTTGCATTGGCCAATGGTGCTTCCACTTTGTATGCATTCTGTCAACACCATTCTCATATGAATATTCCTCACCATCATGGAGGAGAAGGCGGCTTTAAAGACGATTTGCGCCTCGCTTGA 699 0.3963 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLSTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGGLELDDLSFQQLRSLEEDMVSSIAKIRDRKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHPQFLFHDEGEEESAVALANGASTLYAFCQHHSHMNIPHHHGGEGGFKDDLRLA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06679 232 Coils Coil 85 105 - -
Vifa1g06679 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa1g06679 232 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g06679 232 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Vifa1g06679 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa1g06679 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa1g06679 232 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g06679 232 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Vifa1g06679 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Vifa1g06679 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g06679 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g06679 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa1g06679 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Vifa1g06679 232 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06679 Vifa-Chr1 1035171493 1035172747 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06679 1 229 MADS-box Gene Family AT3G54340 45.415 1.49e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa1g06679 K-box 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06679 K09264 - gmx:100784496 395.201