Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06673 ATGTTGTGTTATCGTCGAGTTTCTCACTGGTGGAACGCTGAAACAATACTTGATAAAAACAAGCGGAAGAAACTTGCGTATAAGATTGTGGTTCAGCTTGCTTTGGACCTCTCCAGAAGTCTTAGCTATCTGCATTCGAAGAAGATTGTTCATCGTGATGTTAAGTCGGAGAATATGTTTCTAGATAGTAACCGGAATCTAAAGAAGGTTGATTTTGGAGTTGCTCGCGTTGAAACTATGAATTCAAGTGACATGACTGGTGAAACTGGAACCCTCGAATATATGGCTCCCAAGGTTTTGGATGGTAAACCTTACAATAGGACATGTGATGTCTATAGCTTTGGTATTTTCTTGTGGGAAATTTATTGCTGTGATATGCCTTTTTGCCAAGCAATTAGATATTTTTAA 408 0.3848 MLCYRRVSHWWNAETILDKNKRKKLAYKIVVQLALDLSRSLSYLHSKKIVHRDVKSENMFLDSNRNLKKVDFGVARVETMNSSDMTGETGTLEYMAPKVLDGKPYNRTCDVYSFGIFLWEIYCCDMPFCQAIRYF 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06673 135 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 23 129 - -
Vifa1g06673 135 SMART serkin_6 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06673 135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
Vifa1g06673 135 Pfam Protein kinase domain 21 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06673 135 SUPERFAMILY Protein kinase-like (PK-like) 16 132 IPR011009 -
Vifa1g06673 135 Gene3D Transferase(Phosphotransferase) domain 1 5 134 - -
Vifa1g06673 135 ProSiteProfiles Protein kinase domain profile. 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06673 Vifa-Chr1 1034260678 1034261301 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06673 19 128 MAP Kinase Kinase Kinase AT3G22750 80.000 5.61e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa1g06673 Pkinase 4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06673 - - dct:110102453 195.282