Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06669 ATGTTGTGTTATCGTCGAGTTTCTCACTGGTGGAACGCTGAAACAATACTTGATAAAAACAGGCGGAAGAAACTTGCGTATAAGATTGTGGTTCAGCTTGCTTTGGACCTCTCCAGAGGTCTTAGCTATCTGCATTCGAAGAAGATTGTTCATCGTGATGTTAAGTCGGAGAATATGTTTCTAGATGGTAACCGGAATCTAAAGATAGTTGATTTTGGAGTTGCTCGCGTTGAAACTATGAATCCAAGTGACATGACTGGTGAAACTGGAACCCTCGAATATATGGCTCCCAAGGTTTTGGATGGTAAACCTTACAATAGGACATGGGATGTATATAGCTTTGGCATTTTCTTGTGGGAAATTTATTGCTGTGGAATTGATGAAGGAGTTGTGAATTTGATTAAAGATGGTGATCGGAGGTATTTATGTTATGGTAGTGAGCCACTCAACAAATGA 456 0.3991 MLCYRRVSHWWNAETILDKNRRKKLAYKIVVQLALDLSRGLSYLHSKKIVHRDVKSENMFLDGNRNLKIVDFGVARVETMNPSDMTGETGTLEYMAPKVLDGKPYNRTWDVYSFGIFLWEIYCCGIDEGVVNLIKDGDRRYLCYGSEPLNK 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06669 151 SMART serkin_6 1 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06669 151 ProSiteProfiles Protein kinase domain profile. 1 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06669 151 Pfam Protein kinase domain 21 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06669 151 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
Vifa1g06669 151 Gene3D Transferase(Phosphotransferase) domain 1 5 138 - -
Vifa1g06669 151 SUPERFAMILY Protein kinase-like (PK-like) 20 125 IPR011009 -
Vifa1g06669 151 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 23 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06669 Vifa-Chr1 1033938025 1033939325 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06669 17 124 MAP Kinase Kinase Kinase AT3G22750 82.407 1.18e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa1g06669 Pkinase 1.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06669 - - pda:103711351 191.045