Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06666 ATGTTGTGTTATCGTCGAGTTTCTCACTGGTGGAACGCTGAAACAATACTTGATAAAAACAGGCGGAAGAAACTTGCGTATAAGATTGTGGTTCAGCTTGCTTTGGACCTCTCCAGAGGTCTTAGCTATCTGCATTCGAAGAAGATTGTTCATCGTGATGTTAAGTCGGAGAATATGTTTCTAGATAGTAACCGGAATCTAAAGAAGGTTGATTTTGGAGTTGCTCGCGTTGAAACTATGAATTCAAGTGACATGACTGGTGAAACTGGAACCCTCGAATATATGGCTCCCAAGGTTTTGGATGGTAAACCTTACAATAGGACATGTGATGCCTATAGCTTTGGCACTTTCTTGTGGGAAATTTATTGCTGTGATATGCCTTTTTGTCAAGCAAGTAGATGTTTTTAA 408 0.3995 MLCYRRVSHWWNAETILDKNRRKKLAYKIVVQLALDLSRGLSYLHSKKIVHRDVKSENMFLDSNRNLKKVDFGVARVETMNSSDMTGETGTLEYMAPKVLDGKPYNRTCDAYSFGTFLWEIYCCDMPFCQASRCF 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06666 135 SUPERFAMILY Protein kinase-like (PK-like) 16 132 IPR011009 -
Vifa1g06666 135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
Vifa1g06666 135 SMART serkin_6 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06666 135 Pfam Protein kinase domain 21 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06666 135 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 23 129 - -
Vifa1g06666 135 ProSiteProfiles Protein kinase domain profile. 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06666 135 Gene3D Transferase(Phosphotransferase) domain 1 5 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06666 Vifa-Chr1 1033751564 1033752186 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06666 17 132 MAP Kinase Kinase Kinase AT3G22750 77.586 8.09e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa1g06666 Pkinase 1.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06666 - - nnu:104598642 196.438