Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06661 ATGCTTTACCAAACTCCCTATCCTCTTCTCTTTCAATTTCATCCTTTACCTTCATCTTCTTCTTGTTCCACCATTCCTCAAATTCCTCTCTTTTCTCATCTACCTTCTCAACAGGTTGAGAAAACAGAAATGGGGTGCGTTGAAACAGCGTTGAAAACAAGTTTAAGGAAAGACATGGTACCTCAAACAATTGTCGACGAGGTTACAGGAGTTAATGGACCAAATGGAACAACAACCTCGGACGATTTTTTCGTTGACGACCTTCTTGATTTCTCTCACGTTGAAGAAGAACAACAAAACGAGGAACAAGAACAAGACTATGTCTGTGTCACTCTCAAACAAAGCAATGAAATTTCGAATTTTGACAACAGTTTCTCTCTCCAACAAGATTACGGTTCTTTACCCACCACCGACCTCAACGTTCCGAGTGATGATGTTGCGGACTTGGAATGGCTTTCTCATTTCGTTGAAGATTCTGATTCCTTCTCGGAATTCTCTGCTGCTATGCCGGTTGTAACTTCAACAACAACGGAGAAAAAACCAATGGTTCAACCTGAGCCGAAGCCGGAGATTAAAACCCCGGTTTTCACTTTCAAAACTCCGGTTCCGGTTCCGGTTCCGGTTCAGGTTCAAACCAAAGCTAGAAGCAAAAGAACCAGAACCGGTGTTCGAGTTTGGCCATTCGGGTCAACTTCTTTAACGGATTCTTCTACAAGTTCAACTTCATCTTCAACCTCATCCTCTCCTACTAGCCCTTTGTTGATTTACACCAACGCGCCACAGAGTTTTGACTCGGTTCCGTTGAAGAAACCGAAGAAAATGACAAGTTTCAATGGTTCCGGTCACGGTGCGGTAGCTCCACCGCGACGGTGCAGTCATTGCGGTGTTCAGAAGACACCTCAGTGGAGAACTGGACCACTTGGAGCAAAAACGCTTTGTAATGCATGTGGGGTCCGTTATAAATCGGGTCGGTTATTACCCGAATATCGACCCGCTTGTAGCCCTACTTTTTCAACTGAATTGCACTCCAACCACCACCGGAAGGTTCTTGAAATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAGTTGAAATTGAAACAGAAACCAAAACCGGTTTGTCCCCTTTTCCGGTTGTTCCCAGTTTTTGA 1152 0.447 MLYQTPYPLLFQFHPLPSSSSCSTIPQIPLFSHLPSQQVEKTEMGCVETALKTSLRKDMVPQTIVDEVTGVNGPNGTTTSDDFFVDDLLDFSHVEEEQQNEEQEQDYVCVTLKQSNEISNFDNSFSLQQDYGSLPTTDLNVPSDDVADLEWLSHFVEDSDSFSEFSAAMPVVTSTTTEKKPMVQPEPKPEIKTPVFTFKTPVPVPVPVQVQTKARSKRTRTGVRVWPFGSTSLTDSSTSSTSSSTSSSPTSPLLIYTNAPQSFDSVPLKKPKKMTSFNGSGHGAVAPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSTELHSNHHRKVLEMRRKKEVVGGVEVEIETETKTGLSPFPVVPSF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06661 383 MobiDBLite consensus disorder prediction 213 253 - -
Vifa1g06661 383 FunFam GATA transcription factor 282 367 - -
Vifa1g06661 383 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 286 347 - -
Vifa1g06661 383 PANTHER GATA TRANSCRIPTION FACTOR 77 357 - -
Vifa1g06661 383 ProSiteProfiles GATA-type zinc finger domain profile. 285 321 IPR000679 GO:0006355|GO:0043565
Vifa1g06661 383 SMART GATA_3 285 339 IPR000679 GO:0006355|GO:0043565
Vifa1g06661 383 MobiDBLite consensus disorder prediction 225 253 - -
Vifa1g06661 383 Gene3D - 284 358 IPR013088 GO:0006355|GO:0008270
Vifa1g06661 383 CDD ZnF_GATA 290 338 IPR000679 GO:0006355|GO:0043565
Vifa1g06661 383 ProSitePatterns GATA-type zinc finger domain. 291 316 IPR000679 GO:0006355|GO:0043565
Vifa1g06661 383 Pfam GATA zinc finger 291 325 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06661 Vifa-Chr1 1033412535 1033413903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06661 48 383 C2C2-Gata Transcription Factor Family AT5G66320 42.276 5.07e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa1g06661 GATA 5.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06661 - - psat:127120186 563.533