Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06644 ATGGAGGAAGTGAAGACGGAAACAACTGCGACCACGACGGTGACGGAGGTGAAGGTAGTTGAAGCTCCGACGAAGATGGTTGCCGATGTTAAGATGAGGGAGAGAGATGTTGATTTTTCTGCACGTAAAGTAGTTCTCGCGGTTGCTGTAGGGGATAATGAGGTTTTGACGAAGAAGCGTAGTCGTCCGATGGTGGAAATTCCAAAGGCAGCCCCTCCGGCAAAACAGAAGCAAAAGCTGAAGGTGATGAAAGAAGATGAGGATGTTTGTTTTATATGTTTTGATGGTGGAAGCCTCGTCCTCTGCGATCGCCGGGGTTGCCCTAAAGCATATCATCCGGCATGTGTCAAGCGAGATGAGGCGTTCTTCCGTTCAAAAGCCAAATGGAATTGCGGTTGGCATATATGCAGTTCTTGTCAGAAAGCATCACATTATATGTGTTATACATGTACGTATTCTTTGTGCAAGGGGTGCATACAAGATGCTGATTTTGTTTGTGTTAGAGGGAGTAAAGGTTTGTGTGGAATGTGCAAGAAAACTATAATGATGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGAAGTGGATTTCGATGACAAGACCAGCTGGGAGTATCTTTTCAAGGTGTATTGGGTATATTTGAAAGAGGATTTATCTTTAACATTTGATGAGCTACTACGAGCTAAAAACCCATTGAAAGGTGCCGCTCCTGAGGTTCGAACTTCCCATGAACTTAATCATCTTAATAAAGACAACAAAGGTTCTGGTTCCGAGAACTTCTGCATAGACATAGAATCAAATAATTTGAAAAATAAGAAGTCTAAGGGACCTTCAGGTGGTGACACAGGTGTGTCTTTGTCTGAATGTGCGACTTGGGCATCAAAGGAGCTTCTAGAATTTGTCTCTCATATGAGAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGAATCTCTTGCTGGAGTATATAAAGAAAAACAATCTGCGTGATCCTCAACAGAAATCCCAAATTGTTGGTGACTCTAGACTAGTAAATTTGTTTGGAAAAGCACGTCTTGGCTACATTGAAATGCTAATGCTCCTTGAACCCCACTTCCTTGTAAAAGACAATACCCGTGCAGAAAATACTCTTGGAGCCGGAATTAGTGATGCTGTTGCTAATGAAAAGGAGGCCATTGACAACTACAATAAACAGCCGATATTAGTTAATGATAAAAGAGGTTCAACAAGTAAAAGGGATGACGTGCCTGTGCCGCAAAATAATCAAGATGCATATGCTGCAATAAATGCTCACAACATTAACTTGATCTACTTGCGTCGAAGTCTGATGGAGAGTCTGATTGATGATACTGAAAGGATTCACGAGAAGATTGCTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGATCAGAAACAAGATATGTATAGACTTGTCCAAATTGTAGGTATAAGCAAGGTTGCTGAACCCTACAAAATTGGCACTAAAACTACTAATATTAAGCTCGAGATTTTAAACTTAAATCGGAAAGAGGTCATATCCATAGACGAGATTTCGAATCAGGAGTTCTCTGAGGATGAATGCAAGCGACTGCGTCAGAGTATAAAGTATGGGCTTTCAAAGAGATTGACCGTGGGAGAGATTCTGAACAAAGCGTTGACATTTCAAGAAATTAGAGTTAATGATTTGTTGGAAGCTGAGAAATTGCGGCTCAACAATCTTCGTGATAGAGCAAGCGAGAAGGGGCACAGAAAAGAGCTTAAAGAATGTGTGGAAAAGTTGCAGCTACTAAACTCACTTGAGGAACGTCAGCGCAGGCTGCATGATATTCCAGATGTACACTCAGACCCCAATTTGGATTCATTGTATGAGTCTGATGAAGATGCAGGAGAGTCAGATGGCAATAAACAAGATGGAAATATACCTATTTTTTCCAGAATTTGGGATGGTGTCTTGAATGGTGTTGGGGGCAGAACACGAGACTTGACCACAGCCAGTGACCCAATTGGAAATACATGCTTAGCAAAGAAGCATATTGACCCTAACGAAATTGCTATTGATGATAGTGCTAATGTTGTAATAAAATCAGAAGTGTCTAGTGTCGCAGTGGACATTTCATCTCCACTTCTCTCTGCAGGGATTGAGCAGCCATTTGATGATTTTATGAATGATAAATCATGGCATTATCAGGATCCATCTAGTAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGCAAGTGGACATTTCCCTCCAGACCTCAGAATATGGAGGATAGACGAGAAACAAGAAAACTCTATATTGTTAAATGATGCACTTAATGGGAAATGCTCCAAAAATGTGCCATTGCAGCACAGCAGCCTATTGCTCTCTTTAGGAGCCAGTGTTGCATTGGACGACAAAGAAAGCAGTCAGGATGGTGGGAGGAATTCAATACAGAATGAAATTTCTGAAGCCAGCCGAATCATAGAACATACAAGAGAACATAAAGTGGATGATACTTCTACCCAGTCTAATGGTAAAGATGAATCTGTAAGGAGCAATGGATGGCATGACCAGTCACATGTACACCCTTTGCAACAACCAACTGTGTTTGCTGAGAAATTGAATGAGAATCATACCAACAAATTAAGTGAGAATCATACCAACAAATTAAGTGAGAATCATGTGATTGAGAAAACCCCCGAAGATAATGGAAATCGTGGCTCGGACAGGATTTCTGGTGGTCAGAATCATCAGAGGCAATCAGATAGTGAAGACAACTCAGGGCAATCTTCGGGACAAAGCTGGAGACACCCTGATGTAAATATTTCTTCCAATTGCTTGGATACCACATCTACTCATGTTTCTGAGACAAGAATATCACCACTTAGACTGGGATTTGATTTGACCCGTCCCCCTTCCCCTTCAACATGTAATACAATTACATGGCAGGCTATTATTGGTGAACCAGATGATTTTGATGAATCAGTTTCAGATCTTTTGGCAGAAGTGGAGGCAATGGAGTCACTCGGTGGCTTGGAATCTCCCACTTCAATTATGAAACGTAGCGAGGAATTGACTGATGGTTCTAAAAATCTTTGTCTCAGTTTTGCAGAGCTTAGCCCAATACTTGATGCAGGTAAGGGCGATGCATTGAGCTCCACATGTGATTTACAGTTACTCTCTCAGTCCACAGTAGCAGAGGAGCCATTACAACAAGCAGATGTCCATCATCATCATCATCAAAGAATTTCAGATGAGCTTTCCTCAAGAAATTCTAAAGTTGATGTGGGTTCAAACAACATTTGTGTTTCAAGTAACCAATGGGAGTCGGGCTCGGAAAGTTCTTCTATTTTTCCATCCACTGAAACATTGGGCATGACTGTAGATACCACTTGGAGACTTGGGTTGGAGAGTAGTACACACTTGGGATGGGGAGGAATGGATCAACGGAATGCAAACACAAGCTGGGGAGTCGGACAGGCGGTAGTGAACGCAACCAGAAGCTCAAATTCACGCACTTCTGTAGTAACTCCAAGCTTTGGGGATAGCCAGACAAGATACGGAAATGATCGGTTTTCTGTGCCCAGAGATCGGGGTTTACCAGGCCATGGTAGGGAACCAAGTTTAGTTAGAGGCAGAAATGCGTGGAACAGGCAACCAGTATTCGGGGTTGGTAATGGAGGACCACACAGAACTCTGCCCAAAGGGCAACGGGTCTGTAAATTTTATGAAAGTGGGTATTGTAGAAAGGGGGCATCCTGTGATTACTTCCACCCATGA 3789 0.422 MEEVKTETTATTTVTEVKVVEAPTKMVADVKMRERDVDFSARKVVLAVAVGDNEVLTKKRSRPMVEIPKAAPPAKQKQKLKVMKEDEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDEAFFRSKAKWNCGWHICSSCQKASHYMCYTCTYSLCKGCIQDADFVCVRGSKGLCGMCKKTIMMIENSAQGNKEMCEVDFDDKTSWEYLFKVYWVYLKEDLSLTFDELLRAKNPLKGAAPEVRTSHELNHLNKDNKGSGSENFCIDIESNNLKNKKSKGPSGGDTGVSLSECATWASKELLEFVSHMRNGDTSLLSQFDVQNLLLEYIKKNNLRDPQQKSQIVGDSRLVNLFGKARLGYIEMLMLLEPHFLVKDNTRAENTLGAGISDAVANEKEAIDNYNKQPILVNDKRGSTSKRDDVPVPQNNQDAYAAINAHNINLIYLRRSLMESLIDDTERIHEKIAGSFVRIRISSGDQKQDMYRLVQIVGISKVAEPYKIGTKTTNIKLEILNLNRKEVISIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTFQEIRVNDLLEAEKLRLNNLRDRASEKGHRKELKECVEKLQLLNSLEERQRRLHDIPDVHSDPNLDSLYESDEDAGESDGNKQDGNIPIFSRIWDGVLNGVGGRTRDLTTASDPIGNTCLAKKHIDPNEIAIDDSANVVIKSEVSSVAVDISSPLLSAGIEQPFDDFMNDKSWHYQDPSSKVQGPFSMLQLYKWNASGHFPPDLRIWRIDEKQENSILLNDALNGKCSKNVPLQHSSLLLSLGASVALDDKESSQDGGRNSIQNEISEASRIIEHTREHKVDDTSTQSNGKDESVRSNGWHDQSHVHPLQQPTVFAEKLNENHTNKLSENHTNKLSENHVIEKTPEDNGNRGSDRISGGQNHQRQSDSEDNSGQSSGQSWRHPDVNISSNCLDTTSTHVSETRISPLRLGFDLTRPPSPSTCNTITWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRSEELTDGSKNLCLSFAELSPILDAGKGDALSSTCDLQLLSQSTVAEEPLQQADVHHHHHQRISDELSSRNSKVDVGSNNICVSSNQWESGSESSSIFPSTETLGMTVDTTWRLGLESSTHLGWGGMDQRNANTSWGVGQAVVNATRSSNSRTSVVTPSFGDSQTRYGNDRFSVPRDRGLPGHGREPSLVRGRNAWNRQPVFGVGNGGPHRTLPKGQRVCKFYESGYCRKGASCDYFHP 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06644 1262 CDD SWIB-MDM2_like 294 369 - -
Vifa1g06644 1262 ProSitePatterns Zinc finger PHD-type signature. 90 150 IPR019786 -
Vifa1g06644 1262 MobiDBLite consensus disorder prediction 885 908 - -
Vifa1g06644 1262 MobiDBLite consensus disorder prediction 885 957 - -
Vifa1g06644 1262 Pfam Plus-3 domain 436 539 IPR004343 GO:0003677
Vifa1g06644 1262 FunFam Zinc finger CCCH domain-containing protein 19 432 561 - -
Vifa1g06644 1262 ProSiteProfiles Plus3 domain profile. 431 564 IPR004343 GO:0003677
Vifa1g06644 1262 ProSiteProfiles SWIB/MDM2 domain profile. 288 371 IPR003121 -
Vifa1g06644 1262 SMART rtf1 431 541 IPR004343 GO:0003677
Vifa1g06644 1262 MobiDBLite consensus disorder prediction 909 957 - -
Vifa1g06644 1262 SUPERFAMILY CCCH zinc finger 1237 1261 IPR036855 GO:0046872
Vifa1g06644 1262 SUPERFAMILY GYF domain 727 781 IPR035445 -
Vifa1g06644 1262 SMART PHD_3 89 135 IPR001965 -
Vifa1g06644 1262 Gene3D SWIB/MDM2 domain 286 378 IPR036885 -
Vifa1g06644 1262 ProSiteProfiles GYF domain profile. 728 782 IPR003169 GO:0005515
Vifa1g06644 1262 SMART swib_2 289 374 IPR019835 -
Vifa1g06644 1262 Gene3D - 432 561 IPR036128 GO:0003677
Vifa1g06644 1262 SUPERFAMILY FYVE/PHD zinc finger 84 134 IPR011011 -
Vifa1g06644 1262 MobiDBLite consensus disorder prediction 612 645 - -
Vifa1g06644 1262 MobiDBLite consensus disorder prediction 830 865 - -
Vifa1g06644 1262 Pfam SWIB/MDM2 domain 296 369 IPR003121 -
Vifa1g06644 1262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 179 IPR013083 -
Vifa1g06644 1262 CDD GYF 728 783 IPR003169 GO:0005515
Vifa1g06644 1262 FunFam Zinc finger CCCH domain-containing protein 19 75 179 - -
Vifa1g06644 1262 Gene3D - 730 786 IPR035445 -
Vifa1g06644 1262 SUPERFAMILY Plus3-like 432 561 IPR036128 GO:0003677
Vifa1g06644 1262 MobiDBLite consensus disorder prediction 1172 1193 - -
Vifa1g06644 1262 MobiDBLite consensus disorder prediction 1172 1213 - -
Vifa1g06644 1262 Pfam GYF domain 731 771 IPR003169 GO:0005515
Vifa1g06644 1262 Coils Coil 565 585 - -
Vifa1g06644 1262 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 979 1262 - -
Vifa1g06644 1262 CDD PHD5_NSD 89 134 - -
Vifa1g06644 1262 MobiDBLite consensus disorder prediction 830 858 - -
Vifa1g06644 1262 SMART gyf_5 729 784 IPR003169 GO:0005515
Vifa1g06644 1262 ProSiteProfiles Zinc finger PHD-type profile. 87 153 IPR019787 -
Vifa1g06644 1262 ProSiteProfiles Zinc finger C3H1-type profile. 1237 1262 IPR000571 GO:0046872
Vifa1g06644 1262 SUPERFAMILY SWIB/MDM2 domain 293 370 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06644 Vifa-Chr1 1030488854 1030494540 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06644 86 175 PHD Transcription Factor Family AT5G36670 30.693 1.75e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vifa1g06644 Plus-3 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06644 - - aprc:113869503 1779.61