Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06640 ATGCGAACGCTTTGTGATGCTTGTGAGAGCGCAGCCGCCATCGTTTTCTGTGCTGCTGATGAGGCTGCACTCTGTCGTGCTTGTGATGAAAAGGTTCATATGTGCAATAAGCTAGCTAGTAGACATGTTAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCGCGCTGCGACATATGTGAGAATGCACCTGCTTTCTTCTATTGCGAAACAGATGGAAGTTCCCTTTGTTTGCAATGCGATATGATAGTTCATGTTGGTGGTAAAAGAACACATGGAAGATATCTTCTATTTAGGCAAAGAGTTGAGTTTCCAGGTGATAAACCTAGTAATGCTGAGAATCCATCTTCACAACCTTTGGATCCGGGTGATATTAAAAGAGGACAAAGTCCACTTCCTAAAAAAAAAATGGGAGAGAAGCAACAGAATCATAGGGTGCCTCCAGTTCCAATTTTAGAACCTAATGCTGATGGAAATAACAAGATGGATAATAAGTTGATTGATTTGAACATGAAGCCTAATAGAATACATGATCATGCATCAAATCACCAGCCATAG 555 0.4162 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPSNAENPSSQPLDPGDIKRGQSPLPKKKMGEKQQNHRVPPVPILEPNADGNNKMDNKLIDLNMKPNRIHDHASNHQP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06640 184 MobiDBLite consensus disorder prediction 167 184 - -
Vifa1g06640 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Vifa1g06640 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vifa1g06640 184 FunFam B-box zinc finger protein 19 2 92 - -
Vifa1g06640 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Vifa1g06640 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Vifa1g06640 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Vifa1g06640 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vifa1g06640 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 128 - -
Vifa1g06640 184 MobiDBLite consensus disorder prediction 105 184 - -
Vifa1g06640 184 CDD Bbox1_BBX-like 56 96 - -
Vifa1g06640 184 MobiDBLite consensus disorder prediction 127 141 - -
Vifa1g06640 184 CDD Bbox1_BBX-like 4 47 - -
Vifa1g06640 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Vifa1g06640 184 Gene3D Classic Zinc Finger 2 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06640 Vifa-Chr1 1029792102 1029793725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06640 1 182 C2C2-CO-like Transcription Factor Family AT4G38960 63.187 3.20e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vifa1g06640 zf-B_box 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06640 - - gmx:100780544 346.28