Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06632 ATGCTGAAGAATTTGAGCATACTGTACCTTTACCAAAATAGTCTCTCTGGTGAGTTGCCAAGTTTGGTTGAAGCATTGAATTTGACACAAGTTGATCTTGCAAAGAATAATCTCATAGGGAAAATACCGGACGATTTTGGAAAGCTTCAAAAGTTAACAGTGTTGCGCTTACACGCGAATAATTTTACAGGAGAGATTCAAGAAAGCATAGGCCATCTTAAATCTTTGACAGAGTTTAATGTTTTTATGAACAAGTTTTCAGGTACTCTTCCTATTAATTTTGGTCTTTCTTCAAAGCTTGAATATTTTCATATTGCAATGAATAATTTTAAGGGAAGGTTACCAGAGAATTTGTGCTATCATGGCATGCTAAAAAATTTGACTGTTTATGAAAATAATCTAAGTGGTGAGTTACCAAAATCACTTGGGAATTGTAGTACCTTGGTTGAGCTGAAAGTTTACAAGAATGAGTTTTATGGTAAAATTCCTGATGGTCTTTGGAGAGCTAGAAATTTGGTGTTTTTTATGGTAAGCCATAACAAGTTCAGTGGTGAACTTCCTCAAAATTTGTCTTCAAATATTTCACTTTTTGATATAAGTTATAATCAGTTTTATGGTGGAATTCCAATTGGAGTAGCTTCTTGGACTAATGTGGTTAGGTTCACAGCTAGCAAGAATTATCTTAATGGAAGTGTTCCTCAAGAGCTAACAGCACTTCCTAAACTTGAAAGATTGTTGCTTGATCAAAATCAGCTTAAAGGGTCACTTCCAAATGATATAGTATCATGGAAATCACTAGTGATTTTAAATTTGAGCCAAAATCAACTTATTGGTAAAATTCCAAGTTCAATTGGTCATTTACCTTCGCTTAGTGTTCTCGATCTATCAGAAAATCAATTCTCGGGCGAAATACCTTCTATACCTCCTAGAATCACAAATCTCAATCTATCATCGAATTATTTGACAGGAAAAGTTCCTAGTGATTTTGAAAACTCAGCTTTTGGTACAAGCTTTTTGAACAATTCTGGTTTATGTGCTGATACACCAAAACTCAGTCTCACCCTTTGCAATTTCGGCCTTGAAAAACCAACCAAAACCTCACATTGGTCTATTGGTTTGATTATTAGCCTCATTCTGGTGACTTTCTTGTTGGCTTTGTTTGCATCATTCATGATTATCAAACTTTCCAAGAAAGGAAAACACGAATCGGAAAGTTCATGGAAGCTCATTGCATTTCAAAGGCTAAGTTTCACAGAATTAGACATACTTTCCTCAATGACAGAACAAAATATCATCGGCAGCGGTGGGTTCGGCACGGTATACCGTGTTCCTGTTAACAGTTTAACTTATGTTGCTGTGAAAAAAATCATGTGTAACAGAAAGTTAAGGCAAAAGCTCGAAACTTCATTTCGCGCGGAAGTTAAACTATTGAGCAGTATTCATCATCGAAACATTGTAAAGTTGTTGTGTTGCATCTCTAATGAGGATTCAATGATGCTTGTGTATGAGTATTTGGAACACAGCAGCCTAGACAAATGGCTACACAACAAGAATAAGTCATCAAATATGTTGGGTTCCGCGCGACATCTTGTCCTTGATTGGCCGAGGCGAATGCAAATAGCCATTGGAATTGCTCATGGTTTGTGCTACATGCATCACGATTGCTCGCCTCCGATTGTTCATCGCGATATAAAAACAAGCAACATACTTCTGGATTCTCAATTCAATGCAAAAGTTGCTGATTTCGGTCTTGCTAGATCGTTGACGAAACCGGAAGAATTCAACACCATGTCAGCTGTTATTGGATCATTTGGTTATATGGCTCCAGAATATGTTCAAACAACAAAAATCAATGAAAAGATTGATGTGTTTAGCTTTGGTGTGATCCTATTGGAGCTAACAACCGGTAAAGAAGCTAACTATGGTGATGAGCATTCATCACTTGTAGAATGGTCATGGAGGCATGTTCTTGTAGGAAGCAACATAGAAGATGTGTTAGACAAAGATTTTGTGGAACCAAGTTGTTTGGATGAAATGTGTAGCATTTTCAAACTTGGGATAATGTGTACTTCTACACTTCCTTCTGGTAGACCTTCCATGAAGGAAGTGTTGCACTTATTGGTTAGAAGTGAAAGAGGGTTTGTGTTTGGAGGTAGGAATGATGTTGTGGGAGAAAATGATGGTGTTCCTTTTCTTAAAAATTCTAAATTGGAAAGTAGGAGGATTGATGTTGTGGATACCGATAGTGACTAG 2253 0.3684 MLKNLSILYLYQNSLSGELPSLVEALNLTQVDLAKNNLIGKIPDDFGKLQKLTVLRLHANNFTGEIQESIGHLKSLTEFNVFMNKFSGTLPINFGLSSKLEYFHIAMNNFKGRLPENLCYHGMLKNLTVYENNLSGELPKSLGNCSTLVELKVYKNEFYGKIPDGLWRARNLVFFMVSHNKFSGELPQNLSSNISLFDISYNQFYGGIPIGVASWTNVVRFTASKNYLNGSVPQELTALPKLERLLLDQNQLKGSLPNDIVSWKSLVILNLSQNQLIGKIPSSIGHLPSLSVLDLSENQFSGEIPSIPPRITNLNLSSNYLTGKVPSDFENSAFGTSFLNNSGLCADTPKLSLTLCNFGLEKPTKTSHWSIGLIISLILVTFLLALFASFMIIKLSKKGKHESESSWKLIAFQRLSFTELDILSSMTEQNIIGSGGFGTVYRVPVNSLTYVAVKKIMCNRKLRQKLETSFRAEVKLLSSIHHRNIVKLLCCISNEDSMMLVYEYLEHSSLDKWLHNKNKSSNMLGSARHLVLDWPRRMQIAIGIAHGLCYMHHDCSPPIVHRDIKTSNILLDSQFNAKVADFGLARSLTKPEEFNTMSAVIGSFGYMAPEYVQTTKINEKIDVFSFGVILLELTTGKEANYGDEHSSLVEWSWRHVLVGSNIEDVLDKDFVEPSCLDEMCSIFKLGIMCTSTLPSGRPSMKEVLHLLVRSERGFVFGGRNDVVGENDGVPFLKNSKLESRRIDVVDTDSD 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06632 750 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 707 - -
Vifa1g06632 750 ProSiteProfiles Protein kinase domain profile. 426 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06632 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 559 571 IPR008271 GO:0004672|GO:0006468
Vifa1g06632 750 SMART serkin_6 426 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06632 750 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 234 353 - -
Vifa1g06632 750 SUPERFAMILY L domain-like 3 331 - -
Vifa1g06632 750 SUPERFAMILY Protein kinase-like (PK-like) 418 707 IPR011009 -
Vifa1g06632 750 Pfam Leucine Rich Repeat 266 287 IPR001611 GO:0005515
Vifa1g06632 750 Gene3D Ribonuclease Inhibitor 1 357 IPR032675 -
Vifa1g06632 750 Gene3D Transferase(Phosphotransferase) domain 1 505 714 - -
Vifa1g06632 750 Pfam Protein kinase domain 428 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06632 750 ProSitePatterns Protein kinases ATP-binding region signature. 432 455 IPR017441 GO:0005524
Vifa1g06632 750 FunFam Receptor-like protein kinase HSL1 406 504 - -
Vifa1g06632 750 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 212 - -
Vifa1g06632 750 Gene3D Phosphorylase Kinase; domain 1 397 504 - -
Vifa1g06632 750 FunFam Kinase family with leucine-rich repeat domain-containing protein 505 720 - -
Vifa1g06632 750 SMART LRR_typ_2 287 314 IPR003591 -
Vifa1g06632 750 SMART LRR_typ_2 2 26 IPR003591 -
Vifa1g06632 750 SMART LRR_typ_2 49 73 IPR003591 -
Vifa1g06632 750 SMART LRR_typ_2 239 263 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06632 Vifa-Chr1 1029137621 1029140013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06632 2 707 Receptor kinase-like Gene Family AT5G25930 50.975 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g06632 Pkinase 7.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06632 - - cam:101515509 1165.98