Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06631 ATGAAAATATCATCATTTACATTTCACTATATTCTAACCTGTTTTCTCATCATTCTAACCCATGCAAAATCTCAATCTCATTACAATCTTAATGGTCAAGAACATGAAACCCTAATGAAAATAAAACAACACTTTCAAAATCCACCAAATCTCACTCATTGGACTTCATCAAACACCTCTCACTGTACTTGGCCAGAGATCAATTGCACAAATGGTTCCATCACATGGTTGTCTTTGGCCAACTACAACATCAGTCAAACCATACCCTCTTTCATATGTGACCTCAAAAACCTCACACATGTTGATTTCAACAACAACTACATACCTGGGATGTTTCCAACATATCTATACAATTGTTCAAATATGGAGTATCTTGATTTGTCTATGAACAATTTTGTTGGAAAGATTCCTGATGATATATTCCGTTTATCAAATTTGAATTATCTTAATCTTAGTTACACTAATTTCATTGGTGATATTCCTTCAAGTGTTGGAAGGTTAAAGCAATTGAGATTTCTTGCACTTCAAGCTTGTTACTTTAATGGAACTTTCCCTGACGAGATTGGAAATTTGTTGAATCTTGAAACATTGGATTTGTCGTCGAATTCGTTTAGGCCTTCTGAGTTGTCGATGAATTGGACCAAGTTGAGTAAATTGAAGGTGTTTTATATGTATGGCTGCAATCTGTTTGGTGAAATGCCTGAGCCAATAGGAAATATGGTTTCTTTGGAGGATTTGGATTTGTCAAAAAATGGTTTAACTGGAAAAATTCCTAGTGGTTTGTTCATGTTGAAGAATCTAACCAGATTGTTACTTTCTAGAAATAGTCTTTCCGGAGAGATGCCTGATGTGGTTGGCGCGTTAAATTTGACTATTATTGATCTTGCAGAGAATCATCTTACAGGAAAAATACCAGATGATTTTGGAAAGCTTCAGAAGTTAACTGGCTTGTCTTTGCCTGTGAATAATTTTTCAGGAGAGATTCCACAAAGCATAGGTCGTCTTCCATCTCTAATTGATTTGAAGGTCTTTATGAACAACTTGTCAGGTACACTTCCTCCTGATTTTGGCCTTTACTCAAAGCTAAGAAGTTTTGACGTTGCAACAAACAGTTTTAAGGGAAGGTTACCGGAGAATCTGTGCCATCATGGAGAGTTACAAAATTTAACTACTTATGATAATCGTCTAAGTGGTGAGTTACCAGAATCACTTGGAAGTTGTAGTAGCCTGTTGGAGGTGAAAATTTACAATAATGAGTTTTATGGTAAAATTCCTAATGGTCTTTGGAAAGCTGAAAATTTGGTGCTTTTTATGGTAAGCCATAATAAGTTCAGTGGTGAACTTCCTCAAAACTTGTCTTCGAATATTTCACTTTTTGATATAAGTTACAATCAGTTTTATGGTGGAATTCCAATTGGAGTATCTGATTGGACTAATGTGGTTGAGTTCATAGCAAGCAAGAATAATCTTAATGGAAGTATTCCTCAAGAGCTAACAGCACTTTCTAAACTTGAAAGACTGTTGCTTGATCAAAATCAACTCAAAGGGTCACTTCCATTTGATATAATATCATGGAAGTCATTAGTGACACTAAATTTGAGACAAAACCAACTCAATGGAGAAATTCCGGTTTCAATTGGTGATATACCTTCCCTTAGTGTTCTTGATCTATCAGAAAATCAATTCTCTGGCGAAATACCTTCTATACTTCCTAGACTTACAGATTTCAATCTATCGTCCAATCATTTAAGAGGAAGAGTTCCTAGTGAATTTGAAAATTCAGCTTATGATAGAAGCTTTTTGAACAATTCTGGTTTATGTGCTGATATCCCAACATTGAACCTTACCTTATGCAACTCTAATTCCAACACTCAAAGGAAAAGCAAAGACTCGTCTTTATCTCCTACATTGATTGTAGTCTTGGTAGTAGTTTCCGTCTTAGTGGCTTCATTGATATCACTCATGATTATCAAACTTCACCGTAAAAGTAAGCAGGGATTTGATAACTCATCATGGAAATTCACTTCATTTCAAAGACTAAATTTCACCGAATCAGATATAGTATCTTCAATGACAGAACATAATATCATCGGAAGAGGTGGATATGGAACGGTTTATAGAGTTGTCATTGACGGATTAGGCTATGTAGCTGTGAAAAAGATCTGGGAAAACAAAAAACTAGACAATAATCTTGAGAAATCATTTCACACTGAGGTTAAAATATTGAGCAGCATTCGGCATCGAAACATTGTGAAATTGTTGTGTTGTATCTCTAATAATGATACAATGCTACTTGTTTACGAGTATGTCGAAAACCGGAGTCTTGATAGATGGCTGCACAAGAAAAATAATATTAAGTCTTCAAATATGCTGTCAAGTTCGGTTCATCATGGTGTTCTTGATTGGACAAAGAGAATGCACATAGCTATTGGTGTTGCTCAAGGTTTGAGCTATATGCATCATGAATGTTCACCACCTGTTGTTCATAGAGATGTGAAAACAAGTAACATTCTTTTGGATTCACAATTCAATGCAAAAGTTACCGATTTTGGTTTGGCTAGGATGCTGATACAGCCTGGTGAGCTTGCTACTATGTCAGCTGTTATTGGTTCATTTGGCTATATGGCTCCAGAATATGTTCAAACAACAAAAGTTAGTGAAAAGGTTGATGTCTACAGCTTTGGTGTTATCCTATTGGAGCTAACGACTGGCAAAGAAGCTAATTATGGTGATGAGCATTCATCTCTTGCAGAATGGTCTTGGCAACACATTCAAGCAGGAAGCAATATAGAAGAGTTGCTTGACAGAGAAGCTACGGAACCAATTCACATAGATGGAATGTGCAAAGTTTTCAAACTTGGTGTTATGTGTACTTCAACACTTCCATCTAGTAGACCTTCCATGAGAGAGGTGTTGCAAGTATTGCTTAACTTTGGTGAATTTTTTGGTTATGGAGAGAGGAATGTTGAACATAATAATGATGTTGTTCCACTTCTTAGAAATTCGAAAAGAGAGTCTAAGTTGGATATTGATAATGATAGTAGCTAG 3048 0.3576 MKISSFTFHYILTCFLIILTHAKSQSHYNLNGQEHETLMKIKQHFQNPPNLTHWTSSNTSHCTWPEINCTNGSITWLSLANYNISQTIPSFICDLKNLTHVDFNNNYIPGMFPTYLYNCSNMEYLDLSMNNFVGKIPDDIFRLSNLNYLNLSYTNFIGDIPSSVGRLKQLRFLALQACYFNGTFPDEIGNLLNLETLDLSSNSFRPSELSMNWTKLSKLKVFYMYGCNLFGEMPEPIGNMVSLEDLDLSKNGLTGKIPSGLFMLKNLTRLLLSRNSLSGEMPDVVGALNLTIIDLAENHLTGKIPDDFGKLQKLTGLSLPVNNFSGEIPQSIGRLPSLIDLKVFMNNLSGTLPPDFGLYSKLRSFDVATNSFKGRLPENLCHHGELQNLTTYDNRLSGELPESLGSCSSLLEVKIYNNEFYGKIPNGLWKAENLVLFMVSHNKFSGELPQNLSSNISLFDISYNQFYGGIPIGVSDWTNVVEFIASKNNLNGSIPQELTALSKLERLLLDQNQLKGSLPFDIISWKSLVTLNLRQNQLNGEIPVSIGDIPSLSVLDLSENQFSGEIPSILPRLTDFNLSSNHLRGRVPSEFENSAYDRSFLNNSGLCADIPTLNLTLCNSNSNTQRKSKDSSLSPTLIVVLVVVSVLVASLISLMIIKLHRKSKQGFDNSSWKFTSFQRLNFTESDIVSSMTEHNIIGRGGYGTVYRVVIDGLGYVAVKKIWENKKLDNNLEKSFHTEVKILSSIRHRNIVKLLCCISNNDTMLLVYEYVENRSLDRWLHKKNNIKSSNMLSSSVHHGVLDWTKRMHIAIGVAQGLSYMHHECSPPVVHRDVKTSNILLDSQFNAKVTDFGLARMLIQPGELATMSAVIGSFGYMAPEYVQTTKVSEKVDVYSFGVILLELTTGKEANYGDEHSSLAEWSWQHIQAGSNIEELLDREATEPIHIDGMCKVFKLGVMCTSTLPSSRPSMREVLQVLLNFGEFFGYGERNVEHNNDVVPLLRNSKRESKLDIDNDSS 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06631 1015 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Vifa1g06631 1015 ProSiteProfiles Protein kinase domain profile. 691 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06631 1015 SMART serkin_6 691 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06631 1015 FunFam Kinase family with leucine-rich repeat domain-containing protein 770 992 - -
Vifa1g06631 1015 FunFam Kinase family with leucine-rich repeat domain-containing protein 673 769 - -
Vifa1g06631 1015 CDD STKc_IRAK 697 975 - -
Vifa1g06631 1015 Gene3D Transferase(Phosphotransferase) domain 1 770 984 - -
Vifa1g06631 1015 SMART LRR_typ_2 95 119 IPR003591 -
Vifa1g06631 1015 SMART LRR_typ_2 240 264 IPR003591 -
Vifa1g06631 1015 SMART LRR_typ_2 570 593 IPR003591 -
Vifa1g06631 1015 SMART LRR_typ_2 143 167 IPR003591 -
Vifa1g06631 1015 SMART LRR_typ_2 191 212 IPR003591 -
Vifa1g06631 1015 SMART LRR_typ_2 501 525 IPR003591 -
Vifa1g06631 1015 FunFam Receptor-like protein kinase HSL1 isoform A 31 182 - -
Vifa1g06631 1015 Gene3D Ribonuclease Inhibitor 209 472 IPR032675 -
Vifa1g06631 1015 Gene3D Phosphorylase Kinase; domain 1 669 769 - -
Vifa1g06631 1015 SUPERFAMILY L domain-like 40 349 - -
Vifa1g06631 1015 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Vifa1g06631 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Vifa1g06631 1015 FunFam Receptor-like protein kinase HSL1 isoform A 294 618 - -
Vifa1g06631 1015 Pfam Protein kinase domain 693 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06631 1015 Gene3D Ribonuclease Inhibitor 473 615 IPR032675 -
Vifa1g06631 1015 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 187 286 - -
Vifa1g06631 1015 Gene3D Ribonuclease Inhibitor 31 208 IPR032675 -
Vifa1g06631 1015 PANTHER UNNAMED PRODUCT 289 907 - -
Vifa1g06631 1015 SUPERFAMILY L domain-like 261 593 - -
Vifa1g06631 1015 SUPERFAMILY Protein kinase-like (PK-like) 682 975 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06631 Vifa-Chr1 1028688363 1028692129 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06631 34 979 Receptor kinase-like Gene Family AT5G25930 49.738 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g06631 Pkinase 4.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06631 - - cam:101515509 1597.41