Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06630 ATGCATGCGTTTCTTCTCATTTTGGCACTCTGCGCACCGTTCTTATCCTACGCCGATCGCAGCGCAGAGATCCAAGCCTTAACGTCGTTTAAGCTCAACCTCCATGATCCTCTCGGAGCTCTCGACGGTTGGGATACTTCCTCGCCGGAAGCGCCGTGTGACTGGCGCGGCGTTGCTTGCAACAACGACCGAGTTACTGAGCTGCGTTTGCCTAGTCTTCAACTCGGTGGTAGACTCAGTGAACGTCTCTCTGAGTTGAGCATGTTGAAGAAGATAAGCCTTCGTTCGAATTTCTTCAACGGGAGTATTCCTTCGTCGCTCATGGAATGTAAGCTTCTACGGTTCTTGTTCTTGCAGGATAATGCGTTTTCCGGTAACGTTCCGCCGGAGATCGGAAACCTCACCGGTCTTCAGATTTTCAACGTTGCTCAGAATCATATCTCTGGAACTATTCCGAGGGAGCTTCCTCTTAGTCTCAAGTACCTTGACCTTTCGTCGAACATTTTCTCCGGCGAGATTCCGGAGACTGTTGCTAATTTGTCTCATCTTCAGCTTATCAACCTCTCGTACAATGAGTTATCCGGTGAGATTCCCGTGACGTTTGGGGAGCTTCAGAAACTGCAATATCTCTGGCTTGACCATAATTTCCTTGGAGGAACTTTACCTTCTGCACTTGCTAATTGCTCTTCGCTCGTGCATCTGAGCGCAGAGGGAAATGCACTCGGCGGTGTGCTTCCGTCGGCGATATCGGCGCTTCCGAAGCTTCAGGTGATTTCTCTTTCTCGGAACAATCTTACTGGTTCCATTCCTGCTTCCGTTTTCTGCAATGTTTCGTTCCACGCGCCGTCTCTGCGGATAGTTCAACTTGGATTCAATGGTTTCACGGGTTTCGTTGGGCTCGAGAGCAACACGTGTTTTAGTCTTCTTCAGGTTTTGGATATTCAGCACAATAGTATAAGAGGCACGTTTCCCTTGTGGTTAACCAATATAACCACGTTGTCAGTCCTTGATCTTTCCAGCAATGCACTTTCCGGTGACGTTCCGACATATATAGAAAATCTTGCTGCGTTGACGGAGTTGAAGATGGCTAATAATTCGTTTACTGGTGTCATTCCGGTGGAAATCAAGAAATGTGGGTCCCTCAGTGTTGTTGATTTTGAAGGCAACAATTTTGGCCGAGAAGTTCCTTCTTTTTTTGGTGATATGAAGGGACTCAAGGTTCTATCTCTTGGTGGAAATAGCTTCTTTGGTTCAGTTCCGGCGAGTTTTGGTAACCTTTCTTTACTTGAAACCTTGAGTTTGAGAAGTAATAAACTAAATGGAACAATGCCTGAAATGATAATGAGGTTGAGCAATTTGACAACTCTGGACCTTAGTGATAACAAGTTTACGGGTGAAATCTATGATAGTATTGGGAATTTGAATAGATTAATAGTCCTCAATCTGAGTGGTAATGGCTTCTCTGGAAAAATTCCTTCTAGTTTGGGAAATCTCTTCAGATTAACTACACTTGATTTGAGTAAGCAGAATCTCTCCGGGGAGTTACCTTTTGAGCTCTCCGGGCTACCAAATCTGCAGGTTATTGCTCTGCAGGAGAACAAGATTTCTGGTGCAGTACCTGAAGGGTTCAGCAGTTTGATGAGTTTGCAGTATGTGAATCTCAGCTCTAATGCATTTTCTGGGCATATTCCTGAGAACTATGGCTTTCTTAGATCCTTGGTTGTTCTTTCACTGTCTCATAATCACATTAGAGGAACAATTCCTTCTGAAATTGGAAACAGCTCTGATATAGAAATTCTTGAGCTTCGATCAAATTCGTTGTCAGGTCGTATTCCCACTGATCTATCTCGCCTCACCCATTTGAAAGTGCTTGATTTGGGTGGTAACAATTTAACTGGGGATATGCCTGAGGAGATCTCCAAATGTCTGTTGTTAACTACATTGTTAGTTGATCACAACCATCTTTCAGGTGCCATACCAGGGTCATTGTCGAATCTATCAAAACTAGCAATGCTGGATCTGTCTACTAACAACTTGAGTGGGGAAATTCCTAGTAATTTTTCCATGATCCCTGATTTGGTGTATTTCAATGTGTCGGGGAACAATTTGGAAGGTGAGATACCGCAAACTTTGGGATCTCGGTTCAACAACCCTTCTGTGTTTGCTGATAATCAGGGTTTATGTGGAAAACCATTGGAATCAAAGTGTGAGGGCGTAGACAATAGGGACAAAAAGAGGTTGATAGTGTTGATTATCATCATTGCAGCAGGAGCTTGCATATTAGTCCTTTTTTGCTGTTTTTACATCATCAGCTTATGGAGATGGCGCAAGAAGCTCAAAGAAAGGGTTTCTGGGGAGAAGAAAAGGAGTCCTGCAAGAGCAAGTTCAGGAGCAAGTGGAGGTCGTGGTAGCAGTGAAAATGGTGGCCCAAAACTCGTGATGTTCAACACCAAAATTACACTTGCGGAAACAATTGAAGCAACAAGACAGTTTGACGAAGAAAATGTACTAAGCAGAACAAGGTATGGATTAGTATTCAAGGCCTGCTACAATGATGGAATGGTCCTTTCCATTCGCAGGCTCCCTGATGGATCATTGGATGAGAACATGTACCGAAAAGAAGCTGAATCGCTAGGAAAAATAAAGCACAGAAATTTAACTGTTCTCAGAGGTTACTATGCAGGACCACCAGATATGCGACTCTTGGCCTATGATTACATGCCCAATGGAAACCTTGCAACTCTCCTCCAAGAAGCTTCTCACCAAGATGGCCATGTTCTAAATTGGCCAATGCGACACCTCATTGCACTAGGAATCGCCCGTGGGTTAGCCTTCATTCACCAATCCTCAATGGTCCACGGCGACGTGAAGCCTCAAAACGTTCTATTTGATGCAGATTTCGAAGCCCATTTATCAGATTTCGGGTTAGAACGACTAACAGTAGCAACTCAAGGAGAAGCAGCCTCCAGTTCATCTTCAGTTGGCACTTTAGGTTACATTTCGCCAGAAGCAATCTTAACCAGCGAAGTTACAAAAGAGTCTGATGTTTACAGCTTTGGCATTGTGTTGTTGGAACTTCTAACAGGAAAGAGACCGGTAATGTTCACCCAGGATGAAGACATAGTGAAGTGGGTGAAAAAACAACTTCAGAGGGGTCAAATAACAGAGCTATTAGAACCTGGTTTACTTGAGTTGGACCCAGAATCATCAGAATGGGAAGAGTTTTTATTAGGTGTGAAAGTTGGATTGCTTTGCACAGCACCAGACCCTCTTGATCGACCAACGATGTCCGACATAGTTTTCATGCTTGAAGGTTGTCGTGTTGGTCCCGATATCCCATCCTCCGCAGATCCCACCTCTCATCATTCTCCGGCATAA 3378 0.4432 MHAFLLILALCAPFLSYADRSAEIQALTSFKLNLHDPLGALDGWDTSSPEAPCDWRGVACNNDRVTELRLPSLQLGGRLSERLSELSMLKKISLRSNFFNGSIPSSLMECKLLRFLFLQDNAFSGNVPPEIGNLTGLQIFNVAQNHISGTIPRELPLSLKYLDLSSNIFSGEIPETVANLSHLQLINLSYNELSGEIPVTFGELQKLQYLWLDHNFLGGTLPSALANCSSLVHLSAEGNALGGVLPSAISALPKLQVISLSRNNLTGSIPASVFCNVSFHAPSLRIVQLGFNGFTGFVGLESNTCFSLLQVLDIQHNSIRGTFPLWLTNITTLSVLDLSSNALSGDVPTYIENLAALTELKMANNSFTGVIPVEIKKCGSLSVVDFEGNNFGREVPSFFGDMKGLKVLSLGGNSFFGSVPASFGNLSLLETLSLRSNKLNGTMPEMIMRLSNLTTLDLSDNKFTGEIYDSIGNLNRLIVLNLSGNGFSGKIPSSLGNLFRLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKISGAVPEGFSSLMSLQYVNLSSNAFSGHIPENYGFLRSLVVLSLSHNHIRGTIPSEIGNSSDIEILELRSNSLSGRIPTDLSRLTHLKVLDLGGNNLTGDMPEEISKCLLLTTLLVDHNHLSGAIPGSLSNLSKLAMLDLSTNNLSGEIPSNFSMIPDLVYFNVSGNNLEGEIPQTLGSRFNNPSVFADNQGLCGKPLESKCEGVDNRDKKRLIVLIIIIAAGACILVLFCCFYIISLWRWRKKLKERVSGEKKRSPARASSGASGGRGSSENGGPKLVMFNTKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLPDGSLDENMYRKEAESLGKIKHRNLTVLRGYYAGPPDMRLLAYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFIHQSSMVHGDVKPQNVLFDADFEAHLSDFGLERLTVATQGEAASSSSSVGTLGYISPEAILTSEVTKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSHHSPA 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06630 1125 Pfam Protein kinase domain 841 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06630 1125 PANTHER LEUCINE RICH REPEAT KINASE 2 546 1105 - -
Vifa1g06630 1125 SMART LRR_sd22_2 156 182 - -
Vifa1g06630 1125 SMART LRR_sd22_2 450 476 - -
Vifa1g06630 1125 SMART LRR_sd22_2 330 356 - -
Vifa1g06630 1125 SMART LRR_sd22_2 618 641 - -
Vifa1g06630 1125 SMART LRR_sd22_2 570 593 - -
Vifa1g06630 1125 SMART LRR_sd22_2 402 428 - -
Vifa1g06630 1125 SMART LRR_sd22_2 252 279 - -
Vifa1g06630 1125 SMART LRR_sd22_2 204 230 - -
Vifa1g06630 1125 SMART LRR_sd22_2 666 689 - -
Vifa1g06630 1125 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Vifa1g06630 1125 SUPERFAMILY Protein kinase-like (PK-like) 810 1113 IPR011009 -
Vifa1g06630 1125 ProSiteProfiles Protein kinase domain profile. 831 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06630 1125 FunFam Putative LRR receptor-like serine/threonine-protein kinase 794 906 - -
Vifa1g06630 1125 FunFam Piriformospora indica-insensitive protein 2 347 445 - -
Vifa1g06630 1125 Gene3D Ribonuclease Inhibitor 19 156 IPR032675 -
Vifa1g06630 1125 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 20 179 - -
Vifa1g06630 1125 Gene3D Transferase(Phosphotransferase) domain 1 907 1111 - -
Vifa1g06630 1125 Pfam Leucine rich repeat 645 703 IPR001611 GO:0005515
Vifa1g06630 1125 Pfam Leucine rich repeat 500 558 IPR001611 GO:0005515
Vifa1g06630 1125 Pfam Leucine rich repeat 158 215 IPR001611 GO:0005515
Vifa1g06630 1125 Pfam Leucine rich repeat 571 631 IPR001611 GO:0005515
Vifa1g06630 1125 Pfam Leucine rich repeat 405 463 IPR001611 GO:0005515
Vifa1g06630 1125 Pfam Leucine rich repeat 309 366 IPR001611 GO:0005515
Vifa1g06630 1125 Gene3D Phosphorylase Kinase; domain 1 805 906 - -
Vifa1g06630 1125 Pfam Leucine Rich Repeat 476 498 IPR001611 GO:0005515
Vifa1g06630 1125 Gene3D Ribonuclease Inhibitor 157 449 IPR032675 -
Vifa1g06630 1125 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 907 1111 - -
Vifa1g06630 1125 SUPERFAMILY RNI-like 395 713 - -
Vifa1g06630 1125 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 447 740 - -
Vifa1g06630 1125 SMART LRR_typ_2 450 470 IPR003591 -
Vifa1g06630 1125 SMART LRR_typ_2 252 276 IPR003591 -
Vifa1g06630 1125 SMART LRR_typ_2 134 158 IPR003591 -
Vifa1g06630 1125 SMART LRR_typ_2 180 203 IPR003591 -
Vifa1g06630 1125 SMART LRR_typ_2 426 449 IPR003591 -
Vifa1g06630 1125 SMART LRR_typ_2 522 545 IPR003591 -
Vifa1g06630 1125 SMART LRR_typ_2 402 425 IPR003591 -
Vifa1g06630 1125 SMART LRR_typ_2 570 594 IPR003591 -
Vifa1g06630 1125 SMART LRR_typ_2 618 642 IPR003591 -
Vifa1g06630 1125 SMART LRR_typ_2 474 498 IPR003591 -
Vifa1g06630 1125 SMART LRR_typ_2 666 689 IPR003591 -
Vifa1g06630 1125 SMART LRR_typ_2 204 228 IPR003591 -
Vifa1g06630 1125 SMART serkin_6 831 1102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06630 1125 SUPERFAMILY RNI-like 67 392 - -
Vifa1g06630 1125 ProSitePatterns Serine/Threonine protein kinases active-site signature. 951 963 IPR008271 GO:0004672|GO:0006468
Vifa1g06630 1125 Gene3D Ribonuclease Inhibitor 450 739 IPR032675 -
Vifa1g06630 1125 MobiDBLite consensus disorder prediction 786 811 - -
Vifa1g06630 1125 FunFam Leucine-rich repeat receptor protein kinase EMS1 197 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06630 Vifa-Chr1 1028506671 1028510048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06630 4 1125 Receptor kinase-like Gene Family AT4G36180 68.254 0.0 1483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vifa1g06630 Pkinase 1.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06630 - - gmx:100795838 1807.34