Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06628 ATGACAAACTCAAAAATGTTCATTTTCCTCTTCATTTTCTTATTCACCTATGCAAATTCTCAATCTCAGTTATACAAACAAGAACATGAAATCCTATTAAACATAAAAAAACACTTTCAAAATCCATCATTTCTAAGTCACTGGACAAAATCAAACACTTCTTCACATTGTTTATGGCTAGAAATTGCATGTGAAAATGACTCAATCATTTCACTCTCAATGATCAACACAAACATAACTCAAACATTGCCACCTTTTCTTTGTGACCTCAAAAACCTCACTCACATTGATTTTCAATTCAATTACATTCCTAATGAGTTTCCAAAGTCTCTTTACAATTGCTCCAAGCTTCAATACCTTGATCTCTCACAGAACCTATTCGTAGGTAGCATACCGAACGATATCGATCGGTTGGGTCGTTTACAGTTTCTTAGCCTCGGGGCAAACAACTTTTCAGGTGATGTTCCTAGGAGTGTTGGGAAGTTGAAGGATTTGAAAAATCTTCAACTTTACCAGTGTCAGTTTAATGGGACTATTGCTGATGAAATTGGTGATTTGTTCAATCTTGAAACTTTGTTATTGTTCTCTAATGGTATGCTACCTAGAACAAAGTTGCCATCTAGTTTTACAAAGTTGAAGAAATTAAAGATCTTTGATATGCATGCCTCCAACTTGTTTGGTGATATTCCAGAAACAGTTGGTGAAATGATGGCTTTGGAGGAGCTTGATTTATCAACAAATTTTTTGAGTGGACAAATTCCAAATGGTTTGTTCACTTTGAAAAATTTGAGTATACTTTATCTCTACAAGAATAATCTTTCTGGAGAGATACTGGATGTTATTGAAGCGTTCGAGTTAACAGACTTGGATCTTTCGATGAACAATCTCACTGGTAAAATACCAGATGGTTTTGGAAACCTCGGAAAGCTAACCTACATGGGTTTGTTTGTGAATCAATTATCCGGGGAGGTTCCGGAAAGCATTGGTCGGCTGCCAGCTCTGATTGATTTTATTGTTTTTCAGAACAATTTATCAGGTAATCTTCCTCATGATTTTGGATGGTTTTCTAATCTTGAAACTTTTCAGATTGGATCTAATAGTTTCAAAGGAAATCTACCACAGAATTTGTGTTATCATGGAAGGTTTGTTGGTTTAACTGCTTACGACAATAGTCTAAGCGGCGAGTTGCCGAAATCTTTAGGTAGTTGTAACAGTTTACAATATCTGAGAGTTGAGAATAATGAGCTTTCTGGTGAAATTCCTAATGGTTTATGGAAAGCTATGAACTTGACAACAATTATGGTAAGTGAGAACAAGTTCAGTGGCGAGCTTCCGGAAAGATTGTCGCCCAGTCTTTCCAGACTTTCCGTAAGTTACAATCGGTTTTCTGGTAGAATTCCAAATGGAGTTTCTTCTTGGAAGAATATAGTGGTGTTCAATGCGAGTAACAACTTTTTCAATGGAAGTATTCCATCGGAGTTAACATCACTTCCTCAGCTAACAACTCTTCTACTCGATAATAACAAACTCATCGGTCGAATTCCTTCAGATATAATATCATGGAAGTCTCTAATAAGTCTAGACTTGAGCCACAATCAACTGTCGGGAGAAATACCAGACGCGGTTTGTCAGTTACCATCTCTCAACATGTTGGACTTATCGGTAAACAAAATCTCGGGCCGAGTTCCACCTCAACTCACGAGACTCACAAACCTCAATCTTTCCTCCAATTATTTGACAGGGAGGATTTCAAGTGATTTCGAAAACCCTGTGTATGACAGAAGCTTTCTGAACAATTCTGGTTTATGTGCTGATACATTAGTACTAAACCTTAATTTGTGTAATTCTGGAACTGCAAGGAGAAGAAGTGATTCATCTACGCCTAAGGCTATGATCATAATCTTGGTGGTAGTAGCTTCTTTAACGGTTTTCTTGTTGATTTTCTCGATTATCAGTTTTTACAGAAAGAGAAAGAGAGGACTGAAAAGGACATGGAAGCTAACTTCCTTTCAGAGGCTCAGTTTCACAAAATCAAACATTGTGTTGTCGATGTCAGAAGATAATATCATTGGTAGCGGCGGATTTGGTTCTGTGTATCGCGTTGCTCTTGACGACGGTTTAGGTTATGTTGCAGTGAAAAAGATAAGGGGAAATAGCAGAAAGTTAGACCAGAAGCTTGTGGATTCATTTCTTGCAGAGGTTGAAATACTTAGCAAAATTCGGCATAACAACATAGTGAAGTTGATGTGTTGTATCTCAAGTGATGATTCTCTACTACTTGTATATGAGTATCATGAAAATCAGAGCCTTGATAGGTGGCTGCGTAAAAAGAATAAGACACCGATTGCGTCCGGGACAGTTCATCATAACATCATTGATTGGCCGAAGAGATTGCATATAGCCATTGGAGCTGCACAAGGTTTGTGCTACATGCATAACGATTGTTCGCCGCCTATTGTTCACCGAGACGTGAAAACAAGTAACATTCTTTTGGATTCTAAATTCAACGCAAAAGTTGCTGATTTCGGTCTCGCCAGGATACTGATCAAGCCAGAAGAACTTGCCACCATGTCAGCTGTGGCTGGCACATTTGGATATATTGCTCCAGAATATGCTCAAACAATTAGAGTGAATGAGAAGATAGATGTTTACAGCTTTGGAGTAGTTCTATTGGAACTGACAACTGGAAAAGAAGCTAATCATGGAGACGAATACTCGTCGCTTGCAGAATGGGCGTGGCGCCATATTCAGATAGGAACCGATATAGAAGAGCTTCTGGACGAAGACGCTGTGGAACCTAGTAACTTGATTGAAATGATCAACATCTTCAAACTCGGGGTTATATGCACTTCAACACTGCCAGCTAGTAGACCATCAATGAAGGAAGTCTTGAAGATATTGATCGGTTGCAGAGATCCGCAAGCTAATGTGGAGAAGATTGTTGATATTTATGATGATGCTCCACTTCTTAAGAATTTGAAATGGGAAAAGCAGGTGGAATATTCAGAATAA 3012 0.3828 MTNSKMFIFLFIFLFTYANSQSQLYKQEHEILLNIKKHFQNPSFLSHWTKSNTSSHCLWLEIACENDSIISLSMINTNITQTLPPFLCDLKNLTHIDFQFNYIPNEFPKSLYNCSKLQYLDLSQNLFVGSIPNDIDRLGRLQFLSLGANNFSGDVPRSVGKLKDLKNLQLYQCQFNGTIADEIGDLFNLETLLLFSNGMLPRTKLPSSFTKLKKLKIFDMHASNLFGDIPETVGEMMALEELDLSTNFLSGQIPNGLFTLKNLSILYLYKNNLSGEILDVIEAFELTDLDLSMNNLTGKIPDGFGNLGKLTYMGLFVNQLSGEVPESIGRLPALIDFIVFQNNLSGNLPHDFGWFSNLETFQIGSNSFKGNLPQNLCYHGRFVGLTAYDNSLSGELPKSLGSCNSLQYLRVENNELSGEIPNGLWKAMNLTTIMVSENKFSGELPERLSPSLSRLSVSYNRFSGRIPNGVSSWKNIVVFNASNNFFNGSIPSELTSLPQLTTLLLDNNKLIGRIPSDIISWKSLISLDLSHNQLSGEIPDAVCQLPSLNMLDLSVNKISGRVPPQLTRLTNLNLSSNYLTGRISSDFENPVYDRSFLNNSGLCADTLVLNLNLCNSGTARRRSDSSTPKAMIIILVVVASLTVFLLIFSIISFYRKRKRGLKRTWKLTSFQRLSFTKSNIVLSMSEDNIIGSGGFGSVYRVALDDGLGYVAVKKIRGNSRKLDQKLVDSFLAEVEILSKIRHNNIVKLMCCISSDDSLLLVYEYHENQSLDRWLRKKNKTPIASGTVHHNIIDWPKRLHIAIGAAQGLCYMHNDCSPPIVHRDVKTSNILLDSKFNAKVADFGLARILIKPEELATMSAVAGTFGYIAPEYAQTIRVNEKIDVYSFGVVLLELTTGKEANHGDEYSSLAEWAWRHIQIGTDIEELLDEDAVEPSNLIEMINIFKLGVICTSTLPASRPSMKEVLKILIGCRDPQANVEKIVDIYDDAPLLKNLKWEKQVEYSE 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06628 1003 SUPERFAMILY L domain-like 35 373 - -
Vifa1g06628 1003 ProSitePatterns Protein kinases ATP-binding region signature. 690 714 IPR017441 GO:0005524
Vifa1g06628 1003 FunFam Receptor-like protein kinase HSL1 isoform A 288 614 - -
Vifa1g06628 1003 Gene3D Ribonuclease Inhibitor 490 610 IPR032675 -
Vifa1g06628 1003 FunFam Receptor-like protein kinase HSL1 isoform A 25 177 - -
Vifa1g06628 1003 SUPERFAMILY RNI-like 285 585 - -
Vifa1g06628 1003 Gene3D Ribonuclease Inhibitor 25 177 IPR032675 -
Vifa1g06628 1003 Gene3D Ribonuclease Inhibitor 178 283 IPR032675 -
Vifa1g06628 1003 Pfam Protein kinase domain 686 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06628 1003 SMART serkin_6 684 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06628 1003 SMART LRR_typ_2 566 589 IPR003591 -
Vifa1g06628 1003 SMART LRR_typ_2 497 521 IPR003591 -
Vifa1g06628 1003 SMART LRR_typ_2 236 260 IPR003591 -
Vifa1g06628 1003 SMART LRR_typ_2 138 162 IPR003591 -
Vifa1g06628 1003 SMART LRR_typ_2 522 545 IPR003591 -
Vifa1g06628 1003 SMART LRR_typ_2 90 114 IPR003591 -
Vifa1g06628 1003 Pfam Leucine Rich Repeat 568 589 IPR001611 GO:0005515
Vifa1g06628 1003 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 205 962 - -
Vifa1g06628 1003 Gene3D Ribonuclease Inhibitor 284 377 IPR032675 -
Vifa1g06628 1003 Gene3D Ribonuclease Inhibitor 378 489 IPR032675 -
Vifa1g06628 1003 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Vifa1g06628 1003 Pfam Leucine rich repeat 498 558 IPR001611 GO:0005515
Vifa1g06628 1003 Gene3D Transferase(Phosphotransferase) domain 1 766 987 - -
Vifa1g06628 1003 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 182 282 - -
Vifa1g06628 1003 Gene3D Phosphorylase Kinase; domain 1 667 764 - -
Vifa1g06628 1003 CDD STKc_IRAK 690 967 - -
Vifa1g06628 1003 PRINTS Leucine-rich repeat signature 545 558 - -
Vifa1g06628 1003 PRINTS Leucine-rich repeat signature 524 537 - -
Vifa1g06628 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Vifa1g06628 1003 FunFam Kinase family with leucine-rich repeat domain-containing protein 765 983 - -
Vifa1g06628 1003 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Vifa1g06628 1003 ProSiteProfiles Protein kinase domain profile. 684 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06628 1003 SUPERFAMILY Protein kinase-like (PK-like) 684 967 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06628 Vifa-Chr1 1027242990 1027246093 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06628 28 1000 Receptor kinase-like Gene Family AT5G25930 51.116 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g06628 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06628 - - gmx:100785907 1385.55