Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06626 ATGATGGAGTCCATGGAGTCATGTGTCCCACCAGGCTTTCGTTTCCACCCAACTGATGAAGAACTTGTTGGTTATTATCTCAGAAAGAAAATTGCTTCTCAGAAAATTGATCTTGATGTTATCCGAGAGATCGATCTTTATCGTATCGAACCATGGGATCTTCAAGATAGATGCAGGATAGGGTATGAAGAGCAGAACGAGTGGTATTTTTTCAGCCACAAAGATAAAAAGTATCCAACAGGTACAAGAACTAACAGAGCTACCATGGCTGGATTTTGGAAAGCTACAGGAAGAGATAAATCAGTTTATGACAAGATGAAACTAATTGGAATGAGGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAATGGACAGAAATCCGATTGGATCATGCATGAATATAGGCTTGAATCTGATGAAAATGGTCCTCCACAGGAGGAAGGATGGGTTGTTTGTAGAGCATTTAAGAAAAGAGCAACAAATAGCCAAAATACAAAAAGTACTATGGAAAGATGGGACACAAGCTATTTCTATGAAGAAGCTGCAAGTAGGGTAAACAATTCCATGGTGGATCCAGTTGAGCTTATTTCAAGGCAACCTCAAAGCTATTTATCTCAAACTTACAATATGTGTAAGCAAGAGATAGAAGCGTGCATGCATGCAGAACAATTTATACAGCTTCCTCAGCTTGAAAGTCCTTCATTGCCAATAATAAAAAGGCCAAGCTCAGTGTCTCTAGTATCATCAGAGAATAATAACGATGATATCGATGATCAAAACAGGTTGTTATTATTATCATCCAACAGCAATAATATTACTACAAATGTTACTGCTGATTGGAGAGATCTTGATAAGTTTGTGGCATCTCAACTCAGTCATGAAGTTGAAATTGATCAAGGAGTGCTCTCAAGTTTTGGTGGAACAAATAATATTCCTACCTCAGATATGGCATTGCTGTTAATGCAGCAAGGTGGTAGGGATGAAGGGAACAAGTTTTTAAATGCAACCTCAGATTGCAGTGATATTGGAATATGCATATTTGAAAAATGA 1053 0.378 MMESMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIREIDLYRIEPWDLQDRCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYDKMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATNSQNTKSTMERWDTSYFYEEAASRVNNSMVDPVELISRQPQSYLSQTYNMCKQEIEACMHAEQFIQLPQLESPSLPIIKRPSSVSLVSSENNNDDIDDQNRLLLLSSNSNNITTNVTADWRDLDKFVASQLSHEVEIDQGVLSSFGGTNNIPTSDMALLLMQQGGRDEGNKFLNATSDCSDIGICIFEK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06626 350 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Vifa1g06626 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 234 - -
Vifa1g06626 350 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Vifa1g06626 350 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Vifa1g06626 350 FunFam NAC domain-containing protein 18 162 - -
Vifa1g06626 350 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06626 Vifa-Chr1 1027119359 1027121377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06626 2 349 NAC Transcription Factor Family AT2G18060 61.333 1.20e-153 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g06626 NAM 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06626 - - aprc:113869508 516.153