Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06624 ATGGCGATTGATCATGAAGACGAACTCAAAGACGAGAAGAACCCTCGCCCCCTCGACGAGGATGATATCGCTCTCCTCAAAACCTACGGTTTGGGACCTTATTCCACAAGCATTAAAAAAGTGGAGAAGGAAATTAAAGATATGGCAAAGAAAGCGAATGACTTATGTGGTATCAAGGAGTCTGATACTGGTTTAGCGGCACCTAGCCAGTGGGATCTTGTTTCTGACAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAAATTGCAAAGTTTGTTGTTGGACTAGGAGACAAGGTTTCCCCCACAGACATAGAGGAAGGAATGCGTGTTGGTGTTGATAGAAACAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGATCCAAGTGTTACCATGATGACAGTTGAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGCTGTAAGGAGCAGATTGAAAAGATGCGTGAAGTTGTTGAACTTCCCATGCTTCATCCTGAGAAATTTGTCAAGCTCGGAATTGATCCTCCAAAGGGTGTGCTTTGTTATGGTCCACCAGGAACTGGCAAAACTCTATTAGCCAGGGCTGTTGCCAATAGGACTGATGCTTGTTTTATTAGAGTCATTGGAAGTGAGCTTGTTCAGAAATATGTCGGTGAGGTGGGTCGGATGGTTCGTGAACTATTTCAGATGGCCCGTTCAAAGAAGGCATGCATTTTGTTTTTTGATGAAGTTGATGCAATTGGAGGTGCGCGATTTGATGATGGAGTTGGTGGTGATAACGAGGTTCAGCGTACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCCCGAGGAAACATCAAAGTTTTGATGGAAACAAACAGGCCCGACACTTTGGATCCAGCACTATTGCGGCCTGGGCGATTGGATCGTAAAGTTGAATCTGGCCTTCCTGATTTAGAGAGAAGGACACAAATATTCAAGATACACACAAGAACCATGAACTGTGAAAGAGATATTCGTTTTGAACTTCTAGCCAAAAAAAAAAAACTTACAGCAACATGA 1059 0.4297 MAIDHEDELKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKDMAKKANDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEVGRMVRELFQMARSKKACILFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMETNRPDTLDPALLRPGRLDRKVESGLPDLERRTQIFKIHTRTMNCERDIRFELLAKKKKLTAT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06624 352 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 11 347 - -
Vifa1g06624 352 Gene3D - 135 313 IPR027417 -
Vifa1g06624 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 345 IPR027417 -
Vifa1g06624 352 CDD RecA-like_PAN_like 143 312 - -
Vifa1g06624 352 FunFam 26S protease regulatory subunit 7 135 314 - -
Vifa1g06624 352 Pfam ATPase family associated with various cellular activities (AAA) 182 314 IPR003959 GO:0005524|GO:0016887
Vifa1g06624 352 SMART AAA_5 178 317 IPR003593 GO:0016887
Vifa1g06624 352 Gene3D - 316 350 - -
Vifa1g06624 352 Gene3D - 33 134 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06624 Vifa-Chr1 1026867073 1026868200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06624 126 348 Calmodulin-binding Proteins AT3G56690 42.667 4.10e-50 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06624 K03061 - gmx:100779787 655.21