Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06617 ATGGGTAGGGTTATCAGGGCACAACGTAAAGGTGCGGGATCAATTTTCAAATCCCACACCCACCACCGTAAAGGCCCCGCCAGATTCCGCAGTCTCGATTTCGGTGAAAGAAACGGCTACTTAAAGGGAGTAATCACCGACATCATCCACGACCCAGGTCGCGGTGCACCTCTTGCCAAGGTCACTTTCCGTCACCCGTTTAGGTATAAGAAACAGAACGAGCTTTTTGTTGCTGCTGAAGGATTATACACTGGGCAGTTTATTTATTGCGGGAAGAAAGCTACGCTTGTTGTTGGTAATGTTTTGCCGGTTAGGTCTATTCCTGAAGGAGCTGTGATTTGTAACGTTGAACACCATGTTGGTGATCGTGGTGCTTTTGCTAGGTGTTCTGGGGATTACGCTATTGTTATTAGTCATAATCCTGATAATGATACATCTAGGGTTAAGCTTCCATCTGGGGCCAAAAAGATTATTCCAAGTGGGTGCAGGGCTATGATTGGGCAAGTTGCGGGTGGAGGAAGGACAGAGAAGCCACTTCTTAAGGCTGGTAATGCTTACCATAAATTTAGAGTCAAGAGGAATTGTTGGCCTAAGGTTCGTGGTGTGGCTATGAATCCGGTTGAACATCCTCACGGAGGAGGTAACCACCAGCATATTGGACATGCTAGTACCGTTAGACGGGATGCTCCTCCTGGGCAAAAGGTTGGTCTCATTGCTGCTAAGAGGACTGGTCGGCTTAGGGGACAAGCTGCTGCTACTGCAGCTAAGGCTGACTGA 777 0.4813 MGRVIRAQRKGAGSIFKSHTHHRKGPARFRSLDFGERNGYLKGVITDIIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKATLVVGNVLPVRSIPEGAVICNVEHHVGDRGAFARCSGDYAIVISHNPDNDTSRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKAD 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06617 258 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Vifa1g06617 258 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g06617 258 Gene3D - 90 169 IPR014722 -
Vifa1g06617 258 Gene3D - 1 86 IPR012340 -
Vifa1g06617 258 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 254 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g06617 258 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Vifa1g06617 258 Pfam Ribosomal Proteins L2, RNA binding domain 14 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vifa1g06617 258 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Vifa1g06617 258 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g06617 258 FunFam 60S ribosomal protein L2 1 86 - -
Vifa1g06617 258 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g06617 258 MobiDBLite consensus disorder prediction 210 230 - -
Vifa1g06617 258 PANTHER RIBOSOMAL PROTEIN L2 2 253 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g06617 258 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vifa1g06617 258 FunFam 60S ribosomal protein L2 170 247 - -
Vifa1g06617 258 FunFam 60S ribosomal protein L8 90 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06617 Vifa-Chr1 1026038403 1026039311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06617 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 91.085 0.0 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06617 K02938 - mnt:21409345 527.324