Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06616 ATGGCCTTGAGAAAATCCAACAAGCTTCCACAAGCTGAAGTTATCAAGCAAATTCTCAAAAGATGTTCAAGTTTTGGCAAAAAGCATGGTTATGATGAAGAGGATCTCCCTGAGGATGTACCAAAAGGTCATTTTGCGGTTTATGTTGGTGAGAATAGAACAAGGTACATTATCCCAATTTCTTGGCTATCACGTCCTCAATTTCAAAGTTTGTTACAAAGAGCTGAAGAGGAGTTTGGTTTCAATCATGATATGGGACTTACTATCCCTTGTGATGAAGTTGTTTTTGAATCATTAACTTCATTGATGAGATAA 315 0.3683 MALRKSNKLPQAEVIKQILKRCSSFGKKHGYDEEDLPEDVPKGHFAVYVGENRTRYIIPISWLSRPQFQSLLQRAEEEFGFNHDMGLTIPCDEVVFESLTSLMR 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06616 104 Pfam Auxin responsive protein 27 102 IPR003676 GO:0009733
Vifa1g06616 104 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 37 101 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06616 Vifa-Chr1 1026007924 1026008238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06616 3 103 Calmodulin-binding Proteins AT4G34750 43.137 2.80e-21 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06616 K14488 - gmx:100798840 188.734