Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06608 ATGTCAAAAAAGCTTTACATTTTTAGCATATTACTAACATTTCTTCTTGTTTTAGTGCAAAATCTAAGCACAATACATTGTCATACAAAGGGAATTCGACCAATACATTCAACAAGAAACGGTTTAACAACTAACCATACAACAGGGACAGAGTTATCAGAACAACAATTCATGAAATGGGTGAGTTTTGTTGGTGGTCTCAAACACACAGTTTTCAAGACTGCAAAAAATAAGCTCTTTGCTTCTTACACTTTGCACGTTGATAAGAATCCTTCTTTTGGAGATTTCATCACTATTCAAGATGCCATTGATTCTCTTCCTTCTATCAATCTTGTTAGAGTTGTCATCAAAGTTCATGCAGGAGTTTACACGGAGAAAGTTAACATTCCTCCATTGAAATCCTTTATAAGCATAGAAGGAGATGGAGCAGATACAACAATTGTTCAATGGGGTGACACTGCTCAAACACAAGGTCCAAGAGGGATTCCAATGGGAACATATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCTAAGAACATCACATTCCAAAATACATTTCCTGTTCCTGCACCAGGAGCAATTGGAAAACAAGCGGTAGCATTTAGAATTTCAGCAGACACGGCATCATTCTTAGGATGCAAATTTTTAGGAGCACAAGATACACTTTATGATCATCTTGGTAGACATTACTATAAAGATTGTTACATTGAAGGTTCTGTTGATTTCATCTTCGGCAATTCTCTCTCCCTCTTCGAGGGATGTCACGTGCACGCGATAGCGAGAAATACAGGAGCACTAACGGCACAAGGAAGGAATAGTATATTACAAGACACAGGTTTCTCATTTGTGAACTGTAAGGTCACGGGTTCAGGGGCACTATACCTTGGAAGAGCTTGGGGTCCATTTTCACGAGTTGTGTTTGCTTATACGAATATGGACAATATCATCCTTCCTAAAGGATGGTATAATTGGGGTGATCCTAACCGTGAAATGACTGTGTTCTATGGACAATACAAATGCACAGGACCTGGAGCAAGTTTTGCTGGGAGAGTATCATGGTCAAGAGAACTTACTGATGAAGAAGCTAAACCTTTTCTTTCACTCACTTTTATTGATGGGACTGAATGGATCAATTTTTAG 1152 0.3845 MSKKLYIFSILLTFLLVLVQNLSTIHCHTKGIRPIHSTRNGLTTNHTTGTELSEQQFMKWVSFVGGLKHTVFKTAKNKLFASYTLHVDKNPSFGDFITIQDAIDSLPSINLVRVVIKVHAGVYTEKVNIPPLKSFISIEGDGADTTIVQWGDTAQTQGPRGIPMGTYGSATFAVNSPYFIAKNITFQNTFPVPAPGAIGKQAVAFRISADTASFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNSLSLFEGCHVHAIARNTGALTAQGRNSILQDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTNMDNIILPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEAKPFLSLTFIDGTEWINF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06608 383 Gene3D - 80 383 IPR012334 -
Vifa1g06608 383 Pfam Pectinesterase 94 377 IPR000070 GO:0030599|GO:0042545
Vifa1g06608 383 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 76 382 - -
Vifa1g06608 383 SUPERFAMILY Pectin lyase-like 81 382 IPR011050 -
Vifa1g06608 383 ProSitePatterns Pectinesterase signature 2. 240 249 IPR033131 -
Vifa1g06608 383 FunFam Pectinesterase 81 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06608 Vifa-Chr1 1025208901 1025211199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06608 44 381 Carbohydrate Esterase AT5G47500 43.953 5.39e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06608 K01051 - gmx:100793314 649.818