Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06603 ATGGGAAACAAAATCGCGCGTACCACGCAAGTTTCCGCGTCGGAGTATTACCTCCACGAGTTACCGTCAACGTACAATTTGGTACTCAAGGAAGTTCTTGGACGAGGCCGCTTCTTCAAATCGATTCAGTGTAAGCACGACGAAGGTTTGGTTCTCGTTAAGGTTTATTTCAAACGCGGCGATTCCATTGATCTATCGGATTATGAACGGCGTCTCAATCAGATTAAGGATATTTTCAGTAGTATTGATCATCCTCATGTTTGGCCTTTTCAGTTTTGGCAAGAAACAGATAAAGCAGCTTATCTTTTGAGGCAATATTTTTTCCATAACTTGCATGATCGATTAAGCACTCGACCTTTTCTTAGTTTTGTTGAGAAGAAATGGTTGGCTTTTCAGTTGCTTTTAGCTGTAAAACAGAGCCACGAGAAGGGAGTGTGTCATGGGGATATCAAGTGTGAAAATGTGCTAATTACATCTTCAAATTGGCTTTACCTTGCTGACTTTGCATCTTTTAAACCCACTTACATTCCATATGATGACCCATCTGATTTCTCTTTTTTCTTTGACACGGGTGGAAGAAGACTCTGTTATCTGGCGCCTGAGAGATTTTATGAAAATGGAGGGGAGATGCAGATGCCACATGATACCCCCTTAAATCCATCAATGGATTTATTTGCTGTCGGGTGTGTAATTGCTGAACTTTTCCTTGAGGGCCAACCACTATTTGAACTGTCTCAACTTCTTGCATATCGCAGAGGGCAATACGATCCAAGTCAACATCTTGAAAAAATACCAGATATTGGAATCCGTAAGATGATTCAACACATGATTCAGTTAGAGCCAGAGTCTCGATTTTCTGCTGAAATATATCTAAAGGAATATGCTGGAATTGTATTCCCTACCTATTTTTCACCATTTCTGCATGATTTTTACCGTTGCTGGAGTCCTCTCCATTCGGATATGAGGGTTTTACTATGCCAGAGTGCTTTCCAGGAGATACTTAAACAAATGATGAACAAGCAGTCATCTCATGATGCAGGTGGAACTTCTGGAGAGCTTTTGGAAGAGATGGTTGCCAAAGAAAGTGTGAGTTTCATGAAGGACACACAAAGGAAAAGAGAGGACATAGGCAAAGGCTTAGTTCATGATCAGTATGAACTTCTTGGTGATACTAATGGCCTACTGAGGGATGCTAAAAATAATAATCAGAATCCATCCGGTCCTCAGCAAGTAATAGGAAATACACAAAACTCTACCTTTCCTGAAAATCTAAAAAGTTTGCAGTCTCCTGGTGAGCTGCTTCAAACTATCTCCAATACATTTCGAGGAAATGATCATCCCTTTTTGAAAAGTATTACTATGAAAGACTTAAATTCGTTGATGTCTGAGTATGACAGTCAGTCAGATACATTTGGAACACCTTTTCTACCATTACCAAATGATACTATGAGATGTGAAGGCATGGTTTTGATAACTTCTTTGTTGTGCTCCTGCATACGCAATGTCAAGTTGCCTCACCTGAGGAGGGCAGCTGTACTCTTGTTGAAGGCGTCTGCCCTATATATTGATGATGAAGATCGTTTGCAGCGTGTTATCCCATATGTGATTGTAATGCTTTCTGATTCAGCAGCAATTGTGCGCTGCGCTGCTTTGGAGACTTTGTGTGACATTCTTCCCATAGTGCGGGATTTCCCTCCCAGTGATGCAAAGATATTTCCTGAGTATATTTTTCCTATGCTTTCCATGCTTCCTGATGACCCTGAGGAAAGTGTGAGGATATGCTATGCCAGCAATATAGCTAAGCTGGCACTCACTGCTTATGGATTCTTGATACACTCAATGAGCTTGAGTGAGGCAGGTGTCCTTGATGAACTGAGTTTGCCACAGAAGCCATTGACATCACCCACTCAGACGACATCTGGGAGAATGAAGATGATAAATAGTGATGTCCAGCTTCTGCAGCTGAGAAAATCAATTGCAGAGGTTGTTCAAGAACTTGTTATGGGTCCAAAGCAAACACCGAATATTAGAAGAGCACTTCTTCAGGACATCGGTAAACTTTGCTACTTCTTTGGCGTGAGGCAGAGTAATGACACACTCTTACCTATCCTTCCCGCCTTCTTAAATGACCGAGATGAGCAATTAAGAACAGTGTTCTATGAAAAGATTGTTTATGTCTGCTTTTTTGTGGGCCAAAGAAGTGTAGAGGAATATCTATTACCTTACATTGAGCAAGCTTTAAGTGACATGACTGAAGCTGTCATTGTTAGAGCCTTAGAATGTTTAACTATTCTATGCAAAAATGGGTTCTTCCGGAAGAGGATATTGCTTCAAATGATTGAACGTGCCTTTGCTTTATTGTGCTATCCTAGTGAATGGGTACGAAGATCAGTTGTCTCTTTCATTTCTGCTAGCAGTGAGAGCCTGGGTGCAGTGGATTCTTATGTTTTCCTTGCTCCTGTTATACGTCCTTTCCTTCGTAGACAACCCGTGTCTCTTGCTTCAGAGAAAGCTCTTTTGTCATGTTTAAAACCTCCTGTCTCAAGACAGGTTTTCTATGAAGTCTTGGAGAGCTCCAGGAGTTCGGACATGTTAGAAAGACAGAGAAAGATATGGTATAGCTCATCACAGTCTAAAATATGGGAAATGGATTTACTTAAAAAAGGAATGGATGAGTTGGACTCGTTAAAGAGCTGGGCTGAGAAGCAACAAGTTTCTGGGGTTCAACAAACTATTGGAACTTCCCTCCCACAGCCAGGGCTAACTGATTGTGACAAAGCTGAGTCTAAATTAAGAGATATGGGGGCCTTCATGCATACTGATAGCAATATGGGGGGACATCGTGATCCCCAATGCTTGGAAAAGTTACAGTTTTCAGGATTTATGTCACCAACCTTTAGTGGTGTAAGCAGTTTGACATATGACAAGCCATCAGAAGGCATACCTTTATATTCCTTCGGTATGGACAGGAGAGGAATGGGTATACCTCCTGCAGCATCTGATTCTCCATTACAAATGAATTCTCTGGGTGTTAGTTCATCTGCAATGCCTTGGGTTAATCCACTTAGTAAGTCCTTTAATTTGGCCAATTCAGTTCCAGCACCAAAGCTTTTTTCAGGTTCTTTTAGCACCAGCAATGGTTCTAAACAGTTCCACCGAGTGGTACACGAACCAGATCCCAAGGAAAGTGAAACAGCTTTTATCAATAGCACCTTTCAAGATTTGGGACTATCTTCTAATAATAAAGGTACAACAATTTCACTTGAAGAAGCTACTGCCCAAGCTGATTTATCAGGATTTCAATCTTTTGCTCGGACATCCATCCCTGATTCTGGTTGGAGGCCGCGTGGGGTGTTGGTTGCGCACCTCCAGGAGCACCGTTCAGCAGTCAGTGACATAGCAGTTTCTTCTGATCACAGTTTTTTTGTGAGTGCATCAGATGACTCTACAGTCAAGATTTGGGATTCCAAAAGGTTAGAAAAGGACATTTCATTCAGGTCAAAGCTAACTTATCACCTAGAGGGAAGCCGCGCGTCGTGTGTAGCAATGCTTCCAGGATCAGCGCGAGTGATAGCTGGAGCATCTGATGGATTTATTCATATGTTTTCCGTTGATCATATCTCTAGAGGTCTAGGAAATGTTGTTGAGAAGTACTCTGGGATTGCTGATGTCTCAAAGAAGGATACCAAAGAAGGTGCCATACTCGGCCTTTTAAATTGCCCCACAGATAATAATAGCATTATGTATAGCACCCAGAACTGTGGCATTCATCTATGGGATACAAGATCAAGTTCCAATTCTTGGACGCTGAAGGCTCCTCCCGAGGAGGGCTACGCCTTGGCCCTAGCATCAGGGTCTTGTTCCAACTGGTTTGTATCAGGGTCGTCCAGGGGTGTAATTACACTTTGGGATCTGAGATTTCGTGTACCTGTAAACTCTTGGAAGTATTCTCCTGCTTGTCCTGTAGAAAAGATTTGTCTCTTCCTTCCTCCTTCAAATGCTTCTCTATCTTCAACCACTTGGCCCCTTGTTTATGTGGCTGCGGGATGCAATGAAGTTTCTCTTTGGAATGCAGAAAATGCTAGCTGCCACCAGGTACTGAGGATGGCCAATTATGACAGTGATGCAGAAATGTCCGATATGCCTTGGGCCTTGGCCAAACCATCTAGTAAGCCAACTTCTCAGTCAGATCCAAGACGAAATGTTAATCGCAAGTATAGAGTTGATGAGCTAAATGAACCTCCTCCCCGTCTTCCTGGTATTCGCACATTACTTCCCTTACCAGGGGGTGATTTATTGACTGGTGGCACTGATTTAAAGATACGTCGATGGGATCATTTCAGTCCTGACAGAAGCTACTGCATTTGTGGACCAAGCCTAAAAGGAGGTGGAAATGATGACTTTTACGAAACAAAATCTAGTTTTGGAGTGCAAGTCGTACAGGAGACAAAGAGACGTCCTCTTGCAGCCAAGCTGACACCAAAGGCAATTCTTGCAGCTGCTGCTACTGATTCTGCCGGTTGTCATCGTGATTCTATAGTTTCTGTGGCTTCGGTTAAGTTAAACCAGAGACTTCTACTTTCAAGTGGTAGAGATGGGGCCATCAAGGTTTGGAAGTAA 4620 0.4247 MGNKIARTTQVSASEYYLHELPSTYNLVLKEVLGRGRFFKSIQCKHDEGLVLVKVYFKRGDSIDLSDYERRLNQIKDIFSSIDHPHVWPFQFWQETDKAAYLLRQYFFHNLHDRLSTRPFLSFVEKKWLAFQLLLAVKQSHEKGVCHGDIKCENVLITSSNWLYLADFASFKPTYIPYDDPSDFSFFFDTGGRRLCYLAPERFYENGGEMQMPHDTPLNPSMDLFAVGCVIAELFLEGQPLFELSQLLAYRRGQYDPSQHLEKIPDIGIRKMIQHMIQLEPESRFSAEIYLKEYAGIVFPTYFSPFLHDFYRCWSPLHSDMRVLLCQSAFQEILKQMMNKQSSHDAGGTSGELLEEMVAKESVSFMKDTQRKREDIGKGLVHDQYELLGDTNGLLRDAKNNNQNPSGPQQVIGNTQNSTFPENLKSLQSPGELLQTISNTFRGNDHPFLKSITMKDLNSLMSEYDSQSDTFGTPFLPLPNDTMRCEGMVLITSLLCSCIRNVKLPHLRRAAVLLLKASALYIDDEDRLQRVIPYVIVMLSDSAAIVRCAALETLCDILPIVRDFPPSDAKIFPEYIFPMLSMLPDDPEESVRICYASNIAKLALTAYGFLIHSMSLSEAGVLDELSLPQKPLTSPTQTTSGRMKMINSDVQLLQLRKSIAEVVQELVMGPKQTPNIRRALLQDIGKLCYFFGVRQSNDTLLPILPAFLNDRDEQLRTVFYEKIVYVCFFVGQRSVEEYLLPYIEQALSDMTEAVIVRALECLTILCKNGFFRKRILLQMIERAFALLCYPSEWVRRSVVSFISASSESLGAVDSYVFLAPVIRPFLRRQPVSLASEKALLSCLKPPVSRQVFYEVLESSRSSDMLERQRKIWYSSSQSKIWEMDLLKKGMDELDSLKSWAEKQQVSGVQQTIGTSLPQPGLTDCDKAESKLRDMGAFMHTDSNMGGHRDPQCLEKLQFSGFMSPTFSGVSSLTYDKPSEGIPLYSFGMDRRGMGIPPAASDSPLQMNSLGVSSSAMPWVNPLSKSFNLANSVPAPKLFSGSFSTSNGSKQFHRVVHEPDPKESETAFINSTFQDLGLSSNNKGTTISLEEATAQADLSGFQSFARTSIPDSGWRPRGVLVAHLQEHRSAVSDIAVSSDHSFFVSASDDSTVKIWDSKRLEKDISFRSKLTYHLEGSRASCVAMLPGSARVIAGASDGFIHMFSVDHISRGLGNVVEKYSGIADVSKKDTKEGAILGLLNCPTDNNSIMYSTQNCGIHLWDTRSSSNSWTLKAPPEEGYALALASGSCSNWFVSGSSRGVITLWDLRFRVPVNSWKYSPACPVEKICLFLPPSNASLSSTTWPLVYVAAGCNEVSLWNAENASCHQVLRMANYDSDAEMSDMPWALAKPSSKPTSQSDPRRNVNRKYRVDELNEPPPRLPGIRTLLPLPGGDLLTGGTDLKIRRWDHFSPDRSYCICGPSLKGGGNDDFYETKSSFGVQVVQETKRRPLAAKLTPKAILAAAATDSAGCHRDSIVSVASVKLNQRLLLSSGRDGAIKVWK 1539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06603 1539 ProSiteProfiles Protein kinase domain profile. 27 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06603 1539 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1506 1539 - -
Vifa1g06603 1539 Pfam HEAT repeat 531 560 IPR000357 GO:0005515
Vifa1g06603 1539 CDD STKc_Vps15 16 303 - -
Vifa1g06603 1539 Gene3D Transferase(Phosphotransferase) domain 1 21 370 - -
Vifa1g06603 1539 ProSiteProfiles HEAT repeat profile. 700 738 IPR021133 -
Vifa1g06603 1539 SUPERFAMILY ARM repeat 425 827 IPR016024 -
Vifa1g06603 1539 FunFam phosphoinositide 3-kinase regulatory subunit 4-like 477 616 - -
Vifa1g06603 1539 Gene3D - 1213 1539 IPR015943 GO:0005515
Vifa1g06603 1539 ProSiteProfiles Trp-Asp (WD) repeats profile. 1123 1155 IPR001680 GO:0005515
Vifa1g06603 1539 SUPERFAMILY Protein kinase-like (PK-like) 26 321 IPR011009 -
Vifa1g06603 1539 SUPERFAMILY WD40 repeat-like 1120 1537 IPR036322 GO:0005515
Vifa1g06603 1539 Pfam WD domain, G-beta repeat 1119 1155 IPR001680 GO:0005515
Vifa1g06603 1539 Gene3D - 617 844 IPR011989 -
Vifa1g06603 1539 SMART serkin_6 27 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06603 1539 Pfam Protein kinase domain 29 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06603 1539 MobiDBLite consensus disorder prediction 397 416 - -
Vifa1g06603 1539 FunFam Protein kinase family protein / WD-40 repeat family protein 24 347 - -
Vifa1g06603 1539 SMART WD40_4 1491 1539 IPR001680 GO:0005515
Vifa1g06603 1539 SMART WD40_4 1166 1203 IPR001680 GO:0005515
Vifa1g06603 1539 SMART WD40_4 1263 1304 IPR001680 GO:0005515
Vifa1g06603 1539 SMART WD40_4 1411 1445 IPR001680 GO:0005515
Vifa1g06603 1539 SMART WD40_4 1116 1155 IPR001680 GO:0005515
Vifa1g06603 1539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Vifa1g06603 1539 PANTHER PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 1 1539 IPR045162 GO:0004674|GO:0016236|GO:0045324
Vifa1g06603 1539 FunFam Protein kinase family protein / WD-40 repeat family protein 628 838 - -
Vifa1g06603 1539 Gene3D - 476 616 IPR011989 -
Vifa1g06603 1539 ProSiteProfiles Trp-Asp (WD) repeats profile. 1506 1539 IPR001680 GO:0005515
Vifa1g06603 1539 Gene3D - 1069 1207 IPR015943 GO:0005515
Vifa1g06603 1539 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1123 1155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06603 Vifa-Chr1 1024665357 1024673412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06603 29 288 MAP Kinase Gene Family AT2G01450 25.581 1.02e-11 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_Pl-Tthe Vifa1g06603 Pkinase 7.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06603 K08333 - gmx:100818467 2704.86