Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06601 ATGGAACAACCTCAACAACAGCAACAACAAAATGATCAGGAAAATGGTGGAGGTGGCAGTAGCGGAAAAGGAAGTGGGTTCAGACAAAGTAGTACAAGGTGGACACCAACAACAGACCAGATAAGAATATTGAAGGATCTTTACTACAACAATGGAATAAGATCACCAAGTGCTGAACAGATTCAGAGGATCTCTGCTAGGTTAAGACAGTACGGTAAGATTGAAGGAAAAAATGTGTTTTATTGGTTTCAAAATCATAAGGCTAGAGAAAGACAGAAGAAAAGATTCACTTCTGATGTTAATGTTCTTCCCATCATTCAAAGAGCACCTAACAATATTTCTATTGCTTCTGCTAATTGGAAACCTGATCATGAACAACAACAACAACAATCCATTCTTCACACCAACCATTCCAATTACAACATTTCATCTTCTGGGCTTTCTTCTGCTTCATGTTCTTCTGCTGAGATGGTTGCTATAGGTTATGGATCTGTGCCTATGGAGAAGAGTTTTAGGGAGTGTTGTACAATATCAGCTGGATGTAGCAGTAGCCAAGTTGGAAGCACCATGAACAACCACTTAGGATGGATTGGTCATCATCATGTTGATCCATATTCTTCACCTTATGCTAATATATTTGAAAAAATAAGAGCAAATGATGAAATCATGGAAGAGGAACAAAAACAAGAATATGAAAATGGTTCACCTGAGATTGAAACTCTTCCTTTATTTCCTATGCATGGTGAAGACATTCATGGTGGATACTGTAACCTCAAGTCAAATTCATCTAACTATGGTGCTGGCCATGGTTGGTATCAAGGTGAAGGTCATGGTTTCATGAATGGTTCTCGTACTACTTCCTTGGAACTTAGCCTCAACTCTTACACTCGTAGATCACCAGATTATGCTAATTGA 915 0.3847 MEQPQQQQQQNDQENGGGGSSGKGSGFRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVNVLPIIQRAPNNISIASANWKPDHEQQQQQSILHTNHSNYNISSSGLSSASCSSAEMVAIGYGSVPMEKSFRECCTISAGCSSSQVGSTMNNHLGWIGHHHVDPYSSPYANIFEKIRANDEIMEEEQKQEYENGSPEIETLPLFPMHGEDIHGGYCNLKSNSSNYGAGHGWYQGEGHGFMNGSRTTSLELSLNSYTRRSPDYAN 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06601 304 CDD homeodomain 32 94 IPR001356 GO:0003677
Vifa1g06601 304 MobiDBLite consensus disorder prediction 1 36 - -
Vifa1g06601 304 ProSiteProfiles 'Homeobox' domain profile. 27 93 IPR001356 GO:0003677
Vifa1g06601 304 Gene3D - 25 92 - -
Vifa1g06601 304 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 9 296 IPR044555 GO:0003700|GO:0099402
Vifa1g06601 304 Pfam Homeodomain 31 92 IPR001356 GO:0003677
Vifa1g06601 304 SUPERFAMILY Homeodomain-like 27 98 IPR009057 -
Vifa1g06601 304 SMART HOX_1 29 97 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06601 Vifa-Chr1 1024571778 1024573229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06601 28 254 Wox Gene Family AT2G17950 41.803 4.65e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vifa1g06601 Homeodomain 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06601 - - vra:106776674 328.561