Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06596 ATGAAGACAAAAACTCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGCTCAAGAAACACCCATCACCTCATTCCTAACTGCAAGTGGTACATTCCATGACGGAGATCTGCTTTTGAATCAGAAAGGAATGCGTCTCATTTCCGAAGAAAAGGAATCAAGGCCTTCTGATGCTAAGGATCTTGAATTTGACTTCACGTTGGACGATCTTGAGACTGTCAAAGTAATCGGCAAAGGTAGCGGTGGTGTAGTGCAGCTCGTTCGACATAAGTGGGTTGGAAAATTGTTTGCTTTAAAGGTCATTCAGATGAATATACAAGAGGATATTCGGAAACAAATTGTTCAGGAACTGAAAATAAACCAAGCATCACAGTGTCCACATGTTGTAGTTTGTTACCATTCATTCTATCATAACGGCGTTATATCTCTTGTATTGGAATACATGGATCGTGGTTCTCTAGTAGATGTAATCAGACAAGTTAATACAATTCTGGAGCCATATCTTGCTGTGGTTTGTAAGCAGGTGTTACAAGGCCTTGTTTACTTGCACAATGAAAGACATGTGATACATAGAGACATCAAACCGTCCAATCTTTTAGTAAATCATAAAGGGGAGGTGAAGATTACTGATTTCGGTGTTAGTGCTATGCTCGCTAGCTCAATGGGCCAAAGAGATACATTTGTTGGAACTTATAATTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTACGGTTACAGCTGTGACATCTGGAGTTTAGGGATGGTAGTACTCGAGTGTGCCATAGGACGGTTTCCTTATATACAATCTGAAGATCAGCAAGCCTGGCCTAGTTTCTATGAGCTTTTGCAAGCAATTGTCGAAAGTCCACCACCTTCTGCTCCTCCTGATCAGTTCTCGCCGGAGTTTTGTTCATTCGTGTCATCCTGCATCAAGAAGGATCCTCGCGAAAGATCAACATCATTGGAGCTTTTGGATCATCCTTTCATAAAAAAGTTTGAAGATAAAGATCTAGATCTTGGAATTTTAGTAGGTAGTTTGGAACCTCCTGTAAATTTTCCTAGATGA 1065 0.4085 MKTKTPLKQLKLSVPAQETPITSFLTASGTFHDGDLLLNQKGMRLISEEKESRPSDAKDLEFDFTLDDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQASQCPHVVVCYHSFYHNGVISLVLEYMDRGSLVDVIRQVNTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGSTYGYSCDIWSLGMVVLECAIGRFPYIQSEDQQAWPSFYELLQAIVESPPPSAPPDQFSPEFCSFVSSCIKKDPRERSTSLELLDHPFIKKFEDKDLDLGILVGSLEPPVNFPR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06596 354 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Vifa1g06596 354 Gene3D Transferase(Phosphotransferase) domain 1 150 343 - -
Vifa1g06596 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06596 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Vifa1g06596 354 SUPERFAMILY Protein kinase-like (PK-like) 66 342 IPR011009 -
Vifa1g06596 354 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 331 - -
Vifa1g06596 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06596 354 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06596 354 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Vifa1g06596 354 CDD PKc_MAPKK_plant_like 67 333 - -
Vifa1g06596 354 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Vifa1g06596 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06596 Vifa-Chr1 1023273380 1023276358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06596 1 354 MAP Kinase Kinase Gene Family AT5G56580 85.070 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vifa1g06596 Pkinase 1.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06596 K04368 - gmx:100786284 664.84