Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06594 ATGGGAGGGCAAATTTTGGGGTATAACACCTACTATCCAGACTTTCATTTCGAAGTAACCCCTACTACCCAGGTTCCTCCTCAGCAGCCTTACTATCCAGGCTTTCATTTCGAAGGAACTCTACTACCCAGTGCCGTTCATGCCGTTCTTCTTCACACCGAAAGAAACCCCTTGACACCGAAAGGAATCTCTTCAAACCGCTCATCTTCACACCAAGAAACGCACAGCAAGCAGTTTAACATCCTCTGCGTTCATCTCTTCAAACACAGAAGCTCTATGCTTGTCATTGTGACATTACTTGGAGCAATGTTTTTTGGGTTTCCTTACAACCGCAAGAAGATAAAAAGTTGTAGAACCAACAAAAATGTTGTTGACAATAACTTGCGCAATTTTAGCTTCAAGGAAATCGTTGAAGCAATGAGTAACTTCAGAGAGGAACTTGGAAGAGGGTCTTGTAGCGTTGTGTACAAAGGAACAATAGAGATGATGGTTGATGTAGCCGTTAAGAAACTTGATAAGTTGCTTCAAGATAGTGATAAGGAATTTCAGACCGAAATGAGTGTGATAGGACAAACTCATCACAGAAACCTTGTTCGTCTTCTTGGATATTGCAATGAGGGACAACATCGGATTTTGCTTTACGAGTTAATGAGCAACGGAACTTTAGCAAGCTTCCTTTTCACCTCTTTAAAACCAAATTGGAACCAACGATTCCAAATTGTTCTTGGAATTGCTAGAGGTCTTGTATACTTGCATGAAGGATGTTGCACCCAAATCATCCATTGTGATATTAAAACCCAAAATATACTTCTAGATGATCACTACAATGCTAGGATTTCAGATTTTGGGTTAGCAAAGCTATTGCTGATTAATCAGAGCCACACCGAAACTGGAATTAGAGGAACCAAAGGGTATGTTGCGCCAGATTGGTTTAGGAGTGCACCAATCACTGCAAAAGTTGATACTTATAGTTTTGGTGTATTGTTGTTAGAGATCATTTGTTGTAGGAAAAATGTAGAGAAGGAATTTGTTAATGAAGAACAAGGGATTTTAACTGATTGGGCTTATGATTGCTATAAGACTAAAAGACTTGACAATCTCTTAGAAAATGATAATGAGGTCGGAAATGACATGATGAGTTTGGAAAAGTTAGTCATGATTGTTATTTGGTGTATTCAAGAAGATCCTTCTCTTAGGCCAACAATGAAGGAGGTTTTACTGATGTTAGAAGGAATAGTCGAAGTTGTTGTTCCCCGAAGTCCCTATCTTTATGGTTCTGTAAGTTGTAATTAA 1293 0.3898 MGGQILGYNTYYPDFHFEVTPTTQVPPQQPYYPGFHFEGTLLPSAVHAVLLHTERNPLTPKGISSNRSSSHQETHSKQFNILCVHLFKHRSSMLVIVTLLGAMFFGFPYNRKKIKSCRTNKNVVDNNLRNFSFKEIVEAMSNFREELGRGSCSVVYKGTIEMMVDVAVKKLDKLLQDSDKEFQTEMSVIGQTHHRNLVRLLGYCNEGQHRILLYELMSNGTLASFLFTSLKPNWNQRFQIVLGIARGLVYLHEGCCTQIIHCDIKTQNILLDDHYNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSAPITAKVDTYSFGVLLLEIICCRKNVEKEFVNEEQGILTDWAYDCYKTKRLDNLLENDNEVGNDMMSLEKLVMIVIWCIQEDPSLRPTMKEVLLMLEGIVEVVVPRSPYLYGSVSCN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06594 430 SMART serkin_6 141 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06594 430 Pfam Protein kinase domain 144 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06594 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Vifa1g06594 430 ProSiteProfiles Protein kinase domain profile. 141 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06594 430 Gene3D Phosphorylase Kinase; domain 1 106 216 - -
Vifa1g06594 430 FunFam S-receptor-like serine/threonine-protein kinase 110 216 - -
Vifa1g06594 430 Gene3D Transferase(Phosphotransferase) domain 1 217 417 - -
Vifa1g06594 430 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 217 417 - -
Vifa1g06594 430 SUPERFAMILY Protein kinase-like (PK-like) 126 410 IPR011009 -
Vifa1g06594 430 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 75 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06594 Vifa-Chr1 1023044699 1023053730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06594 96 414 Receptor kinase-like Gene Family AT5G45780 39.144 5.77e-71 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa1g06594 Pkinase 4.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06594 - - mtr:25487002 611.298