Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06587 ATGAAAAACCAAAACACATTGATTCTGTCTTTTCTCTTCCTCATTCTCCATTTTGCTACAACAAAAGCTGGTTTTAGTGTTGGTGTAGGTGTAGGTGTTGGAAGTGGAGTTGTTTGGGTTGGAGGTGGTGGTAATAGCAACCAAAACCCAAAAGCCTATGAATCTCCAATATCAAAAATGGATTCAGCTTTTTCAGCTCTTCAAGCATGGAAATCTTCAATCACTGATGATCCTTTAAAGATTCTAGATTCTTGGGTTGGTTCAAATGTTTGTTCATACAAAGGAATCTTCTGTGCAAATCCTGAGAAGGGAAATGAAATGTCTTCAAATTCTGCTGAATCTGCTTCACTAGTTGTTGCAGGAATAGATCTAAACCATGCAAATCTTCAAGGAACACTTGTAAAAGATCTATCTTTACTCACTGATGTGTCCATTCTTCATCTCAACAGTAACAGATTCAGTGGGACAGTACCTGAAACATTCAAAGATCTTGTTTTTCTACAAGAGTTAGATTTAAGCAATAACCAGCTTTCAGGCTTATTACCTCAAGAGCTTTTCAACAAGAATCTTGATGCAATATTTATCAACAACAATGAATTCGAAGGCGAAATTCCAACAAACTTAGGTAACTCACCTGCTTCTGTGATTAACTTAGCTAACAACAAATTGAGTGGAAATATTCCAGCTAGTTTTGGTTTCATGGGATCAAAGATAAAAGAGATTCTGTTTCTGAATAATCAATTAACTGGTTGTGTACCAGAAGGAGTAGGACTTTTCACTGAAATGGAAGTTCTTGATGTGAGTTTCAATTCTCTAATGGGTCATTTGCCTGATACATTGTCTTGTTTACAGAATATAGAAGTGCTTAATTTGGCTCATAATCAGCTTTCTGGAGAGTTATCTGATATAGTATGTTCATTGCGAAGTTTGGCGAATTTAACAGTTGCTTATAATTTCTTTTCGGGGTTTAGTCAACAATGTTCTAAGCTGCCTTTTAGGAATGTTGGTTTCGATTTTTCGCTTAATTGTATTCCTGGGAGGGACATGCAGAGACCACACCCTGAATGTTCAATGATCCCAGGTGGTAGCTTAAGTTGTTTCAGAATTCCAACACCAAAGCCTTTTATGTGTGGTTCTATGTCTGTAAGTAATTCTGAGAACACTGATCCTACCTCAGAATCACATTCGCAAACAGAATCTCCTTGA 1206 0.369 MKNQNTLILSFLFLILHFATTKAGFSVGVGVGVGSGVVWVGGGGNSNQNPKAYESPISKMDSAFSALQAWKSSITDDPLKILDSWVGSNVCSYKGIFCANPEKGNEMSSNSAESASLVVAGIDLNHANLQGTLVKDLSLLTDVSILHLNSNRFSGTVPETFKDLVFLQELDLSNNQLSGLLPQELFNKNLDAIFINNNEFEGEIPTNLGNSPASVINLANNKLSGNIPASFGFMGSKIKEILFLNNQLTGCVPEGVGLFTEMEVLDVSFNSLMGHLPDTLSCLQNIEVLNLAHNQLSGELSDIVCSLRSLANLTVAYNFFSGFSQQCSKLPFRNVGFDFSLNCIPGRDMQRPHPECSMIPGGSLSCFRIPTPKPFMCGSMSVSNSENTDPTSESHSQTESP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06587 401 Gene3D Ribonuclease Inhibitor 60 214 IPR032675 -
Vifa1g06587 401 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 178 391 - -
Vifa1g06587 401 Pfam Leucine rich repeat 144 199 IPR001611 GO:0005515
Vifa1g06587 401 Pfam Leucine rich repeat N-terminal domain 62 98 IPR013210 -
Vifa1g06587 401 PRINTS Leucine-rich repeat signature 167 180 - -
Vifa1g06587 401 PRINTS Leucine-rich repeat signature 283 296 - -
Vifa1g06587 401 SUPERFAMILY L domain-like 115 331 - -
Vifa1g06587 401 MobiDBLite consensus disorder prediction 379 401 - -
Vifa1g06587 401 Gene3D Ribonuclease Inhibitor 215 334 IPR032675 -
Vifa1g06587 401 FunFam Nuclear pore complex protein NUP107 60 229 - -
Vifa1g06587 401 SMART LRR_typ_2 164 188 IPR003591 -
Vifa1g06587 401 SMART LRR_typ_2 283 307 IPR003591 -
Vifa1g06587 401 SMART LRR_typ_2 140 163 IPR003591 -
Vifa1g06587 401 SMART LRR_typ_2 259 282 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06587 Vifa-Chr1 1022674387 1022675664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06587 59 366 Leucine-rich Repeat extension Gene Families AT3G22800 44.144 1.19e-86 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06587 - - psat:127117995 699.508