Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06580 ATGGGTTTGTGTTTTTCTTCCACGAAAGTTGTGAGCGGCTCTAACGGCAACACAACGAATAATGAAAACCGTAAACGGAATTCGTCGACTTCCACGGAGACCGGTACTGGGACGTCGACGAAGGCGGGAGGGGTGACGGTACAGAAGCATCTGGTGGTTCCGAACTCTGGTCAGCGGCGGAGAGGGCTGGAGGAAGGACAGAAGAAGGGTAATCCGAGTCAGCAGACGAAGCCGAAAGACAAAGCTGGGACGCGGCATGTTCCGTGTGGGAAGCGGACGGATTTTGGTTATGAGAAGGATTTTGAGAAGAGGTTTTCGCTTGGGAAATTGTTGGGACATGGACAGTTTGGGTATACGTATGTTGGAATTGATAAATCTAATGGAGATCGTGTTGCTGTTAAGAGACTTGAGAAAGCAAAGATGGTTCTCCCCATTGCTGTTGAAGATGTAAAGAGAGAGGTCAAGATATTGAAAGAACTTACAGGCCATGAAAACGTGGTTCAGTTCTTTAATGCTTTTGAGGATGATTCATATGTGTACATAGTTATGGAGTTATGCGAGGGGGGAGAACTACTAGACCGGATATTGGGCAAGAAGGACAGCCGTTATACTGAAAAAGATGCTGCAGTGGTTGTAAGGCAGATGCTGAAGGTTGCAGCTCAATGTCATTTACATGGTTTAGTACATCGCGACATGAAGCCAGAGAATTTTCTTTTCAAATCAAACAGAGAAGATTCAGCTTTAAAGGCTACTGATTTTGGTTTGTCGGATTTCATAAAACCTGGAAAGAGGTTTTCAGATATTGTTGGAAGTGCGTACTATGTCGCACCAGAAGTGTTAAAACGGAAGTCAGGCCCTGAATCGGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGGCCATTTTGGGATAAGACCGAGGATGGTATCTTCAAGGAGGTCTTACGAAATAAGCCTGATTTCCGGCGGAAACCATGGCCAACCATAAGTAATGCTGCAAAAGATTTTGTGAAGAAATTGTTGGTAAAAGATCCTCGAGCAAGATTAACTGCTGCTCAGGCTCTATCACATCCGTGGGTTAGAGAAGGAGGAGAGGCATCTGAGATTCCGATTGATATATCTGTCCTAAATAACATGCGACAGTTTGTAAAGTATAGTCGATTGAAACAATTTGCATTAAGGGCATTGGCCAGCACACTTAACGAAGGTGAGTTTTCTGATCTAAAAGATCAGTTTGATGCAATAGACGTGGACAAAAATGGCGCTATTAGTCTGGAAGAGATGAGACAGGCTCTTGCTAAAGATCTTCCATGGAAGTTGAAAGAATCCCGGGTATTAGAGATATTGCAAGCGATAGACAGCAACACAGATGGACTAGTAGATTTCACCGAGTTTGTAGCAGCTACGTTACATGTGCATCAATTGGAGGAACATGACTCTGATAAGTGGCAGCAACGGTCGCAGGCTGCTTTTGAGAAATTTGACTTAGATAAGGATGGCTATATTACTCCAGAGGAACTGAGAATGCATACTGGAATGAGAGGCTCCATTGATCCTTTGCTTGAGGAAGCCGATATCGACAAAGATGGAAAGATCAGCTTACCAGAATTCCGGAGACTTTTAAGAACTGCAAGCATTGGTTCACGAAATATAACAAGCCCGTCTCACCGTCACAGAAGAGCCTAG 1701 0.4409 MGLCFSSTKVVSGSNGNTTNNENRKRNSSTSTETGTGTSTKAGGVTVQKHLVVPNSGQRRRGLEEGQKKGNPSQQTKPKDKAGTRHVPCGKRTDFGYEKDFEKRFSLGKLLGHGQFGYTYVGIDKSNGDRVAVKRLEKAKMVLPIAVEDVKREVKILKELTGHENVVQFFNAFEDDSYVYIVMELCEGGELLDRILGKKDSRYTEKDAAVVVRQMLKVAAQCHLHGLVHRDMKPENFLFKSNREDSALKATDFGLSDFIKPGKRFSDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEGEFSDLKDQFDAIDVDKNGAISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSDKWQQRSQAAFEKFDLDKDGYITPEELRMHTGMRGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRNITSPSHRHRRA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06580 566 Gene3D Phosphorylase Kinase; domain 1 98 190 - -
Vifa1g06580 566 Gene3D - 382 545 - -
Vifa1g06580 566 Pfam Protein kinase domain 107 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06580 566 FunFam Calcium-dependent protein kinase 28 406 475 - -
Vifa1g06580 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vifa1g06580 566 CDD STKc_CAMK 104 364 - -
Vifa1g06580 566 ProSitePatterns EF-hand calcium-binding domain. 530 542 IPR018247 -
Vifa1g06580 566 Gene3D - 406 475 - -
Vifa1g06580 566 ProSiteProfiles EF-hand calcium-binding domain profile. 487 522 IPR002048 GO:0005509
Vifa1g06580 566 FunFam calcium-dependent protein kinase 28-like 191 384 - -
Vifa1g06580 566 PANTHER SERINE/THREONINE-PROTEIN KINASE 81 534 - -
Vifa1g06580 566 FunFam CDPK-related kinase 1 98 190 - -
Vifa1g06580 566 Gene3D Transferase(Phosphotransferase) domain 1 191 372 - -
Vifa1g06580 566 ProSitePatterns EF-hand calcium-binding domain. 500 512 IPR018247 -
Vifa1g06580 566 ProSiteProfiles Protein kinase domain profile. 105 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06580 566 SUPERFAMILY Protein kinase-like (PK-like) 103 376 IPR011009 -
Vifa1g06580 566 Pfam EF-hand domain pair 493 546 IPR002048 GO:0005509
Vifa1g06580 566 Pfam EF-hand domain pair 410 474 IPR002048 GO:0005509
Vifa1g06580 566 MobiDBLite consensus disorder prediction 1 89 - -
Vifa1g06580 566 SMART serkin_6 105 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06580 566 ProSitePatterns EF-hand calcium-binding domain. 458 470 IPR018247 -
Vifa1g06580 566 SUPERFAMILY EF-hand 397 548 IPR011992 -
Vifa1g06580 566 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Vifa1g06580 566 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Vifa1g06580 566 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Vifa1g06580 566 ProSiteProfiles EF-hand calcium-binding domain profile. 525 552 IPR002048 GO:0005509
Vifa1g06580 566 SMART efh_1 449 477 IPR002048 GO:0005509
Vifa1g06580 566 SMART efh_1 491 519 IPR002048 GO:0005509
Vifa1g06580 566 SMART efh_1 521 549 IPR002048 GO:0005509
Vifa1g06580 566 SMART efh_1 412 440 IPR002048 GO:0005509
Vifa1g06580 566 MobiDBLite consensus disorder prediction 1 45 - -
Vifa1g06580 566 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06580 Vifa-Chr1 1021386059 1021390844 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06580 1 559 EF-hand Containing Proteins AT2G17890 75.088 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa1g06580 Pkinase 2.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06580 K13412 - gmx:100817249 949.503