Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06576 ATGCTTTCTTCTCTTTCTCTTCCTTCTTCTCTCTTCGCCGCCGGAGTTAACACCACCGTAGCTCCACCTCCCCGCCGCGTCAGATCTAAACCAATTGTCATCTCCGCCAGCGCTACTGCCACCGCTGAAGCTCGCTCTACATGGACGGAACAACCAAGAACTTCGTATCTGAACATTAACACGAACACGAACTCTTCTCCTGCATCGCTCTACGAGATCCTCGGTATACAAGCAAGTGCTTCCGTCCAAGAGATCAAATCTGCATACCGTCGACTTGCCAGAGTCTACCACCCTGACGTGGCGGCGAATCACCGAAAAAATTCGTCGGCGGACGACTTCATGAAAATTCACGCTGCTTACTCCACGCTATCGGATCCTGATAAACGTGCTAATTATGATCGGAGTTTATTCCGGCGACAACGGCCGTTGTCGATGATGTCCGGCTACTCGAGTCGGAAATGGGAAACGGATCAGTGTTGGTAG 483 0.5135 MLSSLSLPSSLFAAGVNTTVAPPPRRVRSKPIVISASATATAEARSTWTEQPRTSYLNINTNTNSSPASLYEILGIQASASVQEIKSAYRRLARVYHPDVAANHRKNSSADDFMKIHAAYSTLSDPDKRANYDRSLFRRQRPLSMMSGYSSRKWETDQCW 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06576 160 ProSiteProfiles dnaJ domain profile. 69 136 IPR001623 -
Vifa1g06576 160 SMART dnaj_3 68 128 IPR001623 -
Vifa1g06576 160 SUPERFAMILY Chaperone J-domain 67 143 IPR036869 -
Vifa1g06576 160 ProSitePatterns Nt-dnaJ domain signature. 113 132 IPR018253 -
Vifa1g06576 160 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 35 142 - -
Vifa1g06576 160 Pfam DnaJ domain 70 133 IPR001623 -
Vifa1g06576 160 Gene3D DnaJ domain 54 151 IPR036869 -
Vifa1g06576 160 CDD DnaJ 71 125 IPR001623 -
Vifa1g06576 160 PRINTS DnaJ domain signature 71 89 IPR001623 -
Vifa1g06576 160 PRINTS DnaJ domain signature 108 128 IPR001623 -
Vifa1g06576 160 PRINTS DnaJ domain signature 89 104 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06576 Vifa-Chr1 1020456545 1020457027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06576 61 133 C2H2 Transcription Factor Family AT1G74250 40.789 5.15e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06576 - - gmx:100816709 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06576 1 1020456545 1020457027 Vifa1g06576 1 1020456545 1020457027 ECH