Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06557 ATGGCCAAAAACAAAGACAAAGCAAGTTCTGATTCTGAAAATTCTTTATTTTCAACAGGTTCAAACTACTCAATGGGTAATAAGTATAGATACATATTTAACAGACTGTTCAGGTTTGCTAATTCATGGAAGAAAAGTAGCACACCAAGAGGTAGAAGAATTTTCCACAGAGATGTTGAAAAAGAAGAATTCCAATATGCTAGTAGTCACTGTCTTTCATCCTATTACAGTGTTTTTGTGGTTAGATTAGCAATCATGGTAATGTTAGCAATCTTGATAGGGCTATTGACTATATTAACATGGCATTTTACGAAGATTTATACCGCAAAATCACTGAGTAGTTTGGCATATGGTTTGCGTTACGAACTTCTGCAACGTCCGATTTTGAGGATGTGGAATATTTTGAACTCTACTTCTGAAATTACAACAGCTCAGGTCAAGTTGTCTCAGTATGTTATCAGACGATATAGCAACCCTGCAAGTCAAGCAGAGCAAGTTGAGCTATATGAAGCAATGAGAGCAGTAACATGGTCACTGTTTGCAAGTAGAAAAGCTCTAAACTCAATAACAATAAATTACAAAAATGGATTTGTTCAAGCATTCCATAGAGATCTAAAAGATAACAACACATTTTACATCTACTCAGATCTTTCAAATTACTCAATGGTTGCATCAACCTCAAACATGGTCAATACCATCTCAACTCATCAAGCTTGGGATGACAAAACAATTCATGGAAACTTCTCAGCAATTTGGTATAGAGAACCACTTGATCCCGTCACAGGCGAAAAAATCGGAAAGGCAATGAAAATTGCACCAGAAGATTTAATCAACATCGCAGGACTTTCACAAGTTCCTGATGGTGTAGCTACATGGCATGTAGCAGTTAGTAAATTTACAGATTCACCTTTGCTTTCAGCAGCGTTACCGGTTTGGGATTCTTCGAATAAAAGTATTATGGCTGTTGTTGGTGTTACAACTGCATTTTATAGTGTTGGACAGTTAATGAGAGAACTTGTTGAGATGCATAGTGGTCACATGTATTTGACTTCACAACAAGGCTATTTGCTCGCAACTTCTACAAGTGCGCCTTTACTTACAAATTCAACTAAGCCACCACCTAAGCTTAAGATGGCTGTGGATTGTGAAGATGGTATAATAAGACTTGGTGCTGAATGGTTGCAGAGAACTTATGGGAATCATTTTCCTAATTCAACTCATGAGGTTCATGTTGAGAATGCTAAACTAGGTCACCAGGAATATTATATTGACTCATTCTACCTAAACTTGAAGAGACTTCCTTTGGTAGGTGTAATCATCATACCAAGAAAGTATATAATGGGACAGGTGGATGAGAGAGCCTTCAAAACTTTAGTTATTCTGATATCAGCAGCTTTGTGTATTTTAGTCATTGGATGCGTTTGCATTTTGATATTGACAAATGGAGTGTCAAAGGAAATGAATCTAAGAGCAGAATTGATAAGTCAACTTGAAGCAAGAAGGAAGGCAGAAGCATCAAGCAACTATAAAAGTCAGTTCCTTGCTAATATGAGTCATGAACTAAGAACGCCTATGGCAGCAGTAATTGGATTGCTGGACATTCTTATATCTGATGATTGTCTCACAAATGAACAATATTCAACAGTTACTCAAATAAGAAAATGTTCAACAGCTCTACTTCGTCTTCTTAACAACATATTGGATCTAAGCAAGGTGGAATCAGGAAAACTTGTACTAGACGATGCAGAATTTGACCTGGGACGTGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAATGCATTAATCACAATGTAGAGACTGTTTTAGACCTTTCTGATGATATGCCAAAAGTAGTTAGGGGTGACTCTGGTAGGGTTGTTCAAGTATTTGCAAATTTGATCAACAATTCAATTAAGTTTACTACATCTGGTCATGTTATTCTGCGAGGATGGTGCGAGTATCCAAATTCTTGCGATAGTCCGAATTTTTATCTTGATCAGAAGAAATCAAGGATTGCACATAAGAACAAAGAGAAGCCAAATGCAAATCATGCAAGGAGAATATCAATGAGAGATAACAAGAATGTGATACTTTGGTTTGAAGTTGAGGATACAGGCTGTGGTATTGATCCCAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAGGCTGATCCATCAACTACCCGACTGCATGGAGGAACTGGTCTTGGTCTTTGCATTGTTAGGAACTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTACCAAAAAGGAGGGTCAAGGAACATTGATGAGATTATGTTTGCTTCTCAGTGCACCTATGGATGTCACAGAACAACACTGTCCACTAAATTTGACAGACAATGGCTTAGTGGTATTGCTTGCACTACAAGGCAACATGAGTAGATTAGTAACATCAAAGTGGTTAACCAAAAAAGGAGTGTGCACAATGGAAGCATCTGAATGGAACGGACTGACTCAAGTTTTAAGGGAACTCTTTCATGCAAGAAGTTCAATTCATAATAACAACAACTTTGATGCACACTATCCAATAAATCTTGAAGGATTCAAGTCCAAACTACTAACCATAAAAGACATGAGGAACCCAATTTTTGTCATTGTTGTTGACATTAGTTTACTCGACTTAAGCACGGATATATGGAAGGAACAACTTAACTTCCTTCATAAGTATTTCGGAAGAGCAAAATTTGTATGGATGTTAAATCATGACACACCAAATACCATAAAGATGGAGCTCCGTAGGAAAGGTCACTTACTAATGGTTAACAAGCCTCTTTACAGAGGAAAAATGATTCATATTTTGGAAGCTGTTATGAAAAACAGAAATATTGAATTACAAAAGAAAAACATGAAAGAGGGAGATTTGCATGAGTTTCTTGAGATTGATTCTACTCATTTTGATGCTGCCACTAGCTCTGATGATTCAGACATATCTGAAGTTAGCGAAAACCCAATTTTAAATTTAACCAATGAAAAAGAACATTTGGAAGAAAAAAATCTTAGGAAAGAAGAATCGTGTTTCTCATTTTCCACCGAAAAACAAGATGAAAAATTTGAGTGTGAGGGAACAAATAGGGTGACAAGGTTGAGAAAAGAAGCGAATGATAAGAAATCACTCGAGGGATTAAGGATTTTGCTCGCAGAAGATACGCCAGTAATTCAAAGGGTAGCAACTATAATGCTTGAAAAAATGGGAGCTGCTGTTGTTGCTGTGGGCGATGGACAACAAGCCGTAGATGCTCTCAACTACATGGGAGTAAGTGCTGAAGATTGTAGAAGAGAGTCTCTCCAGAAGGAAAGAAATACAAGATCACAAACCGAGATTTTGACTTGTCATCCATATGATTTGATCCTAATGGATTGTCAGATGCCGAAGATGGATGGATATGAAGCAACAAAAGCGATAAGAAAATCAGAAGAAGGAACAGGAAAGCACATACCGATCGTTGCTCTAACAGCACATGCAATGTCGTGCGATGAAGCCAAATGCCTTAAGGTTGGGATGGATGCTTACTTAACAAAGCCAATTGATTTCAAGCTTATGGTCTCCACCATTCTCTCACTCACTAAACCAACATCTTGA 3609 0.3749 MAKNKDKASSDSENSLFSTGSNYSMGNKYRYIFNRLFRFANSWKKSSTPRGRRIFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLSSLAYGLRYELLQRPILRMWNILNSTSEITTAQVKLSQYVIRRYSNPASQAEQVELYEAMRAVTWSLFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMVASTSNMVNTISTHQAWDDKTIHGNFSAIWYREPLDPVTGEKIGKAMKIAPEDLINIAGLSQVPDGVATWHVAVSKFTDSPLLSAALPVWDSSNKSIMAVVGVTTAFYSVGQLMRELVEMHSGHMYLTSQQGYLLATSTSAPLLTNSTKPPPKLKMAVDCEDGIIRLGAEWLQRTYGNHFPNSTHEVHVENAKLGHQEYYIDSFYLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISAALCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLDDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSGRVVQVFANLINNSIKFTTSGHVILRGWCEYPNSCDSPNFYLDQKKSRIAHKNKEKPNANHARRISMRDNKNVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVTKKEGQGTLMRLCLLLSAPMDVTEQHCPLNLTDNGLVVLLALQGNMSRLVTSKWLTKKGVCTMEASEWNGLTQVLRELFHARSSIHNNNNFDAHYPINLEGFKSKLLTIKDMRNPIFVIVVDISLLDLSTDIWKEQLNFLHKYFGRAKFVWMLNHDTPNTIKMELRRKGHLLMVNKPLYRGKMIHILEAVMKNRNIELQKKNMKEGDLHEFLEIDSTHFDAATSSDDSDISEVSENPILNLTNEKEHLEEKNLRKEESCFSFSTEKQDEKFECEGTNRVTRLRKEANDKKSLEGLRILLAEDTPVIQRVATIMLEKMGAAVVAVGDGQQAVDALNYMGVSAEDCRRESLQKERNTRSQTEILTCHPYDLILMDCQMPKMDGYEATKAIRKSEEGTGKHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKLMVSTILSLTKPTS 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06557 1202 Coils Coil 994 1014 - -
Vifa1g06557 1202 Pfam His Kinase A (phospho-acceptor) domain 510 575 IPR003661 GO:0000155|GO:0007165
Vifa1g06557 1202 CDD HisKA 510 571 IPR003661 GO:0000155|GO:0007165
Vifa1g06557 1202 Gene3D - 577 775 IPR036890 -
Vifa1g06557 1202 CDD REC_hyHK_CKI1_RcsC-like 1053 1194 - -
Vifa1g06557 1202 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 564 770 IPR036890 -
Vifa1g06557 1202 SMART REC_2 1051 1194 IPR001789 GO:0000160
Vifa1g06557 1202 SMART HisKA_10 509 575 IPR003661 GO:0000155|GO:0007165
Vifa1g06557 1202 FunFam Histidine kinase 1-like protein 497 576 - -
Vifa1g06557 1202 Pfam Response regulator receiver domain 1053 1193 IPR001789 GO:0000160
Vifa1g06557 1202 ProSiteProfiles Histidine kinase domain profile. 516 774 IPR005467 -
Vifa1g06557 1202 ProSiteProfiles Response regulatory domain profile. 1052 1198 IPR001789 GO:0000160
Vifa1g06557 1202 Gene3D - 1031 1198 - -
Vifa1g06557 1202 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 497 576 IPR036097 GO:0000155|GO:0007165
Vifa1g06557 1202 SUPERFAMILY CheY-like 1049 1198 IPR011006 -
Vifa1g06557 1202 Gene3D - 497 576 - -
Vifa1g06557 1202 PRINTS Bacterial sensor protein C-terminal signature 699 713 IPR004358 GO:0016310|GO:0016772
Vifa1g06557 1202 PRINTS Bacterial sensor protein C-terminal signature 717 727 IPR004358 GO:0016310|GO:0016772
Vifa1g06557 1202 PRINTS Bacterial sensor protein C-terminal signature 758 771 IPR004358 GO:0016310|GO:0016772
Vifa1g06557 1202 PRINTS Bacterial sensor protein C-terminal signature 734 752 IPR004358 GO:0016310|GO:0016772
Vifa1g06557 1202 SMART HKATPase_4 622 774 IPR003594 -
Vifa1g06557 1202 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 622 772 IPR003594 -
Vifa1g06557 1202 PANTHER TWO-COMPONENT HISTIDINE KINASE 63 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06557 Vifa-Chr1 1015776726 1015782802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06557 28 1202 Histidine Kinase Gene Family AT2G17820 64.691 0.0 1569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g06557 HATPase_c 5.8e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06557 - - gmx:100814068 1926.37