Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06556 ATGGCCAAAAACAAAGACAAAGCAAGTTCTGATTCTGAAAATTCTTTATTTTCAACAGGTTCAAACTACTCAATGGGTAATAAGTATAGATACATATTTAACAGACTGTTCAGGTTTGCTAATTCATGGAAGAAAAGTAGCACACCAAGAGGTAGAAGAATTTTCCACAGAGATGTTGAAAAAGAAGAATTCCAATATGCTAGTAGTCACTGTCTTTCATCCTATTACAGTGTTTTTGTGGTTAGATTAGCAATCATGGTAATGTTAGCAATCTTGATAGGGCTATTGACTATATTAACATGGCATTTTACGAAGATTTATACCGCAAAATCACTGAGTAGTTTGGCATATGGTTTGCGTTACGAACTTCTGCAACGTCCGATTTTGAGGATGTGGAATATTTTGAACTCTACTTCTGAAATTACAACAGCTCAGGTCAAGTTGTCTCAGTATGTTATCAGACGATATAGCAACCCTGCAAGTCAAGCAGAGCAAGTTGAGCAGCTATATGAAGCAATGAGAGCAGTAACATGGTCACTGTTTGCAAGTAGAAAAGCTCTAAACTCAATAACAATAAATTACAAAAATGGATTTGTTCAAGCATTCCATAGAGATCTAAAAGATAACAACACATTTTACATCTACTCAGATCTTTCAAATTACTCAATGGTTGCATCAACCTCAAACATGGTCAATACCATCTCAACTCATCAAGCTTGGGATGACAAAACAATTCATGGAAACTTCTCAGCAATTTGGTATAGAGAACCACTTGATCCCGTCACAGGCGAAAAAATCGGAAAGGCAATGAAAATTGCACCAGAAGATTTAATCAACATCGCAGGACTTTCACAAGTTCCTGATGGTGTAGCTACATGGCATGTAGCAGTTAGTAAATTTACAGATTCACCTTTGCTTTCAGCAGCGTTACCGGTTTGGGATTCTTCGAATAAAAGTATTATGGCTGTTGTTGGTGTTACAACTGCATTTTATAGTGTTGGACAGTTAATGAGAGAACTTGTTGAGATGCATAGTGGTCACATGTATTTGACTTCACAACAAGGCTATTTGCTCGCAACTTCTACAAGTGCGCCTTTACTTACAAATTCAACTAAGCCACCACCTAAGCTTAAGATGGCTGTGGATTGTGAAGATGGTATAATAAGACTTGGTGCTGAATGGTTGCAGAGAACTTATGGGAATCATTTTCCTAATTCAACTCATGAGGTTCATGTTGAGAATGCTAAACTAGGTCACCAGGAATATTATATTGACTCATTCTACCTAAACTTGAAGAGACTTCCTTTGGTAGGTGTAATCATCATACCAAGAAAGTATATAATGGGACAGGTGGATGAGAGAGCCTTCAAAACTTTAGTTATTCTGATATCAGCAGCTTTGTGTATTTTAGTCATTGGATGCGTTTGCATTTTGATATTGACAAATGGAGTGTCAAAGGAAATGAATCTAAGAGCAGAATTGATAAGTCAACTTGAAGCAAGAAGGAAGGCAGAAGCATCAAGCAACTATAAAAGTCAGTTCCTTGCTAATATGAGTCATGAACTAAGAACGCCTATGGCAGCAGTAATTGGATTGCTGGACATTCTTATATCTGATGATTGTCTCACAAATGAACAATATTCAACAGTTACTCAAATAAGAAAATGTTCAACAGCTCTACTTCGTCTTCTTAACAACATATTGGATCTAAGCAAGGTGGAATCAGGAAAACTTGTACTAGACGATGCAGAATTTGACCTGGGACGTGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAATGCATTAATCACAATGTAGAGACTGTTTTAGACCTTTCTGATGATATGCCAAAAGTAGTTAGGGGTGACTCTGGTAGGGTTGTTCAAGTATTTGCAAATTTGATCAACAATTCAATTAAGTTTACTACATCTGGTCATGTTATTCTGCGAGGATGGTGCGAGTATCCAAATTCTTGCGATAGTCCGAATTTTTATCTTGATCAGAAGAAATCAAGGATTGCACATAAGAACAAAGAGAAGCCAAATGCAAATCATGCAAGGAGAATATCAATGAGAGATAACAAGAATGTGATACTTTGGTTTGAAGTTGAGGATACAGGCTGTGGTATTGATCCCAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAGGCTGATCCATCAACTACCCGACTGCATGGAGGAACTGGTCTTGGTCTTTGCATTGTTAGGAACTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTACCAAAAAGGAGGGTCAAGGAACATTGATGAGATTATGTTTGCTTCTCAGTGCACCTATGGATGTCACAGAACAACACTGTCCACTAAATTTGACAGACAATGGCTTAGTGGTATTGCTTGCACTACAAGGCAACATGAGTAGATTAGTAACATCAAAGTGGTTAACCAAAAAAGGAGTGTGCACAATGGAAGCATCTGAATGGAACGGACTGACTCAAGTTTTAAGGGAACTCTTTCATGCAAGAAGTTCAATTCATAATAACAACAACTTTGATGCACACTATCCAATAAATCTTGAAGGATTCAAGTCCAAACTACTAACCATAAAAGACATGAGGAACCCAATTTTTGTCATTGTTGTTGACATTAGTTTACTCGACTTAAGCACGGATATATGGAAGGAACAACTTAACTTCCTTCATAAGTATTTCGGAAGAGCAAAATTTGTATGGATGTTAAATCATGACACACCAAATACCATAAAGATGGAGCTCCGTAGGAAAGGTCACTTACTAATGGTTAACAAGCCTCTTTACAGAGGAAAAATGATTCATATTTTGGAAGCTGTTATGAAAAACAGAAATATTGAATTACAAAAGAAAAACATGAAAGAGGGAGATTTGCATGAGTTTCTTGAGATTGATTCTACTCATTTTGATGCTGCCACTAGCTCTGATGATTCAGACATATCTGAAGTTAGCGAAAACCCAATTTTAAATTTAACCAATGAAAAAGAACATTTGGAAGAAAAAAATCTTAGGAAAGAAGAATCGTGTTTCTCATTTTCCACCGAAAAACAAGATGAAAAATTTGAGTGTGAGGGAACAAATAGGGTGACAAGGTTGAGAAAAGAAGCGAATGATAAGAAATCACTCGAGGGATTAAGGATTTTGCTCGCAGAAGATACGCCAGTAATTCAAAGGGTAGCAACTATAATGCTTGAAAAAATGGGAGCTGCTGTTGTTGCTGTGGGCGATGGACAACAAGCCGTAGATGCTCTCAACTACATGGGAGTAAGTGCTGAAGATTGTAGAAGAGAGTCTCTCCAGAAGGAAAGAAATACAAGATCACAAACCGAGATTTTGACTTGTCATCCATATGATTTGATCCTAATGGATTGTCAGATGCCGAAGATGGATGGATATGAAGCAACAAAAGCGATAAGAAAATCAGAAGAAGGAACAGGAAAGCACATACCGATCGTTGCTCTAACAGCACATGCAATGTCGTGCGATGAAGCCAAATGCCTTAAGGTTGGGATGGATGCTTACTTAACAAAGCCAATTGATTTCAAGCTTATGGTCTCCACCATTCTCTCACTCACTAAACCAACATCTTGA 3612 0.3751 MAKNKDKASSDSENSLFSTGSNYSMGNKYRYIFNRLFRFANSWKKSSTPRGRRIFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLSSLAYGLRYELLQRPILRMWNILNSTSEITTAQVKLSQYVIRRYSNPASQAEQVEQLYEAMRAVTWSLFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMVASTSNMVNTISTHQAWDDKTIHGNFSAIWYREPLDPVTGEKIGKAMKIAPEDLINIAGLSQVPDGVATWHVAVSKFTDSPLLSAALPVWDSSNKSIMAVVGVTTAFYSVGQLMRELVEMHSGHMYLTSQQGYLLATSTSAPLLTNSTKPPPKLKMAVDCEDGIIRLGAEWLQRTYGNHFPNSTHEVHVENAKLGHQEYYIDSFYLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISAALCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLDDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSGRVVQVFANLINNSIKFTTSGHVILRGWCEYPNSCDSPNFYLDQKKSRIAHKNKEKPNANHARRISMRDNKNVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVTKKEGQGTLMRLCLLLSAPMDVTEQHCPLNLTDNGLVVLLALQGNMSRLVTSKWLTKKGVCTMEASEWNGLTQVLRELFHARSSIHNNNNFDAHYPINLEGFKSKLLTIKDMRNPIFVIVVDISLLDLSTDIWKEQLNFLHKYFGRAKFVWMLNHDTPNTIKMELRRKGHLLMVNKPLYRGKMIHILEAVMKNRNIELQKKNMKEGDLHEFLEIDSTHFDAATSSDDSDISEVSENPILNLTNEKEHLEEKNLRKEESCFSFSTEKQDEKFECEGTNRVTRLRKEANDKKSLEGLRILLAEDTPVIQRVATIMLEKMGAAVVAVGDGQQAVDALNYMGVSAEDCRRESLQKERNTRSQTEILTCHPYDLILMDCQMPKMDGYEATKAIRKSEEGTGKHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKLMVSTILSLTKPTS 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06556 1203 Gene3D - 578 776 IPR036890 -
Vifa1g06556 1203 Gene3D - 1032 1199 - -
Vifa1g06556 1203 SMART HKATPase_4 623 775 IPR003594 -
Vifa1g06556 1203 Gene3D - 498 577 - -
Vifa1g06556 1203 CDD REC_hyHK_CKI1_RcsC-like 1054 1195 - -
Vifa1g06556 1203 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 498 577 IPR036097 GO:0000155|GO:0007165
Vifa1g06556 1203 Coils Coil 995 1015 - -
Vifa1g06556 1203 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 565 771 IPR036890 -
Vifa1g06556 1203 FunFam Histidine kinase 1-like protein 498 577 - -
Vifa1g06556 1203 CDD HisKA 511 572 IPR003661 GO:0000155|GO:0007165
Vifa1g06556 1203 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 623 773 IPR003594 -
Vifa1g06556 1203 SMART HisKA_10 510 576 IPR003661 GO:0000155|GO:0007165
Vifa1g06556 1203 PRINTS Bacterial sensor protein C-terminal signature 759 772 IPR004358 GO:0016310|GO:0016772
Vifa1g06556 1203 PRINTS Bacterial sensor protein C-terminal signature 700 714 IPR004358 GO:0016310|GO:0016772
Vifa1g06556 1203 PRINTS Bacterial sensor protein C-terminal signature 735 753 IPR004358 GO:0016310|GO:0016772
Vifa1g06556 1203 PRINTS Bacterial sensor protein C-terminal signature 718 728 IPR004358 GO:0016310|GO:0016772
Vifa1g06556 1203 SMART REC_2 1052 1195 IPR001789 GO:0000160
Vifa1g06556 1203 ProSiteProfiles Response regulatory domain profile. 1053 1199 IPR001789 GO:0000160
Vifa1g06556 1203 SUPERFAMILY CheY-like 1050 1199 IPR011006 -
Vifa1g06556 1203 Pfam His Kinase A (phospho-acceptor) domain 511 576 IPR003661 GO:0000155|GO:0007165
Vifa1g06556 1203 PANTHER TWO-COMPONENT HISTIDINE KINASE 63 781 - -
Vifa1g06556 1203 Pfam Response regulator receiver domain 1054 1194 IPR001789 GO:0000160
Vifa1g06556 1203 ProSiteProfiles Histidine kinase domain profile. 517 775 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06556 Vifa-Chr1 1015776726 1015782802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06556 28 1203 Histidine Kinase Gene Family AT2G17820 64.637 0.0 1566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g06556 HATPase_c 5.8e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06556 - - gmx:100807543 1930.22