Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06553 ATGATGATAGGAGAACATCATCGAGCGAATCCAACGGTTCATGTTCCTCCATGGAACTTCCATGATGATCCAACGGCTGAGATTTACTCCTCTTATTTCCCTGAGGATTGCAATGCTGGAACCGGAGATTACTCTCCGTACTATCTCCGTGAAGCACTGACTGCGCTTCAGCGTTATCTTCCGTCAAACGAGTTAGACAACGATTCCGACTCGGATGTCCACGGCCGTGACTCTGATTCTCCGGTGGACGCGTACTCATGCGATCATTTCCGCATGTACGAGTTCAAGATAAGAAGATGTGCTCGCGGAAGATCGCACGACTGGACGGAATGTCCGTACGCTCATCCCGGAGAGAAAGCACGCCGCCGTGATCCAAGGAAGTTTCATTACTCCGGTACAGCGTGTCCTGATTTTCGCAAGGGTAACTGCAAGAAAGGTGATGGTTGTGAGTACGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCGGCTCGTTACCGGACTCAGCCATGCAAGGACGGAACTAGTTGCCGCCGGCGTGTTTGTTTTTTCGCTCACACACCGGAGCAGATCCGTCTCAATGTTCAACAAAGTACTCCACGGAGCCTTAACTCGCCCGATTCTTATGACGGTTCTCCGCTTAGACAGACAGCTTTGCCGTTTATTGCTTCTCCGATTTCAATTTCTCCACCTGAGTTAGAATCACCGCCGATATCCCCCATGAGTAAATCTTTAGGTTCATCTTTGGGTTCAAGTTCAGTTAACGAGATGGTTGCTTCCTTAAGAAATTTACAGTTAGGGAAGTTAAAATCTATGCCGGTTAATAGAAACCTTACATTCGGGTCAAGTTTCGGGTCACCGAGATGTTCTGTGCTTCGACCCGGGTTTTGTAGTCTTCCAAATACACCTACTCAAAAACATGGTTCGGGTCGGGTTGGAGTAAGTTATTTCGATCTTTGGGAACAGAGTTGTGAGGAGGAGCCTATAATGGAAAGAGTTGAATCTGGAAGAGACATAAGGGCTAAAATGTTTGAGAAATTAAGCAAAGAAAATTCTATGGAAAATTCTGACCCGGATTTGTATCCGGGTCAAGCTGGTGGGGCTCCGGATGTTGGATGGGTTTCTGAGCTGCTGAAATGA 1137 0.4749 MMIGEHHRANPTVHVPPWNFHDDPTAEIYSSYFPEDCNAGTGDYSPYYLREALTALQRYLPSNELDNDSDSDVHGRDSDSPVDAYSCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDGCEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQIRLNVQQSTPRSLNSPDSYDGSPLRQTALPFIASPISISPPELESPPISPMSKSLGSSLGSSSVNEMVASLRNLQLGKLKSMPVNRNLTFGSSFGSPRCSVLRPGFCSLPNTPTQKHGSGRVGVSYFDLWEQSCEEEPIMERVESGRDIRAKMFEKLSKENSMENSDPDLYPGQAGGAPDVGWVSELLK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06553 378 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Vifa1g06553 378 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Vifa1g06553 378 Gene3D - 129 192 - -
Vifa1g06553 378 PANTHER UNKEMPT FAMILY MEMBER 51 378 IPR045234 -
Vifa1g06553 378 FunFam Zinc finger CCCH domain-containing protein 66 87 155 - -
Vifa1g06553 378 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Vifa1g06553 378 MobiDBLite consensus disorder prediction 345 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06553 Vifa-Chr1 1015596570 1015597706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06553 85 270 C2H2 Transcription Factor Family AT5G12850 52.332 3.90e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g06553 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06553 - - aprc:113867365 597.045