Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06543 ATGGGAAGAGCTCCATGTTGTGATAAATCAAAAGTGAAAAGAGGATCATGGTCCCAGGAAGAAGATGCTATTCTCAAAAACTATCTTCACAAACATGGCACAGCTGGTAATTGGATAGCTCTTCCTCAAAAAGCAGGTCTAAAGCGTTGTGGAAAAAGTTGTCGTTTAAGATGGTTGAACTATTTGAGGCCTAATATCAAGCTTGGAGGTTTCACTGAGGAAGAAGATAATATAATCTTCAACCTCTATAGCACCATAGGAAGCAGGTGGTCCCTTATAGCAGCTCAACTAGCAGGAAGAACAGACAATGATGTGAAGAATCATTGGAACACTAAACTTAAGAAAAAGTTTTTGGCACAAAACTCATCCACAAGCAACAATATATACACTTTCAGCAATACTACTGCTACTACTACTACTAGTTCTGACCACTTCTCAAGTACTTTGACTTTTCAACCTCAACTTGAAAAACCCTTTGTCTTTGATCAAAACATGAACACGTCTTATTTTGATTCATACAATGTTATGGATTTGGATCAAACACCAATTGGTATTCCTTTACCAATGACAGTGAAATCAGAAGCTTTGTATGCTGGTAGCAGCTTGAGTAGTAGCTGTAGTACTACACCAACCACCATGGAAATTTCAAGTTTTTCAAGTGCACCCTTCTTAGAAGATAAGAACAATCATAGTCATTGGTTTGGGAATGATCATGATGATGCAATTCTTCTTGAGTTTGTTCTTGAAGATTTTTTAAACCTTGACCCTCATCTGACTAACTATGAAATTTGA 792 0.3712 MGRAPCCDKSKVKRGSWSQEEDAILKNYLHKHGTAGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKLGGFTEEEDNIIFNLYSTIGSRWSLIAAQLAGRTDNDVKNHWNTKLKKKFLAQNSSTSNNIYTFSNTTATTTTSSDHFSSTLTFQPQLEKPFVFDQNMNTSYFDSYNVMDLDQTPIGIPLPMTVKSEALYAGSSLSSSCSTTPTTMEISSFSSAPFLEDKNNHSHWFGNDHDDAILLEFVLEDFLNLDPHLTNYEI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06543 263 SMART sant 13 64 IPR001005 -
Vifa1g06543 263 SMART sant 67 115 IPR001005 -
Vifa1g06543 263 PANTHER OS09G0431300 PROTEIN 1 216 - -
Vifa1g06543 263 CDD SANT 71 113 IPR001005 -
Vifa1g06543 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vifa1g06543 263 FunFam Transcription factor RAX3 7 68 - -
Vifa1g06543 263 Gene3D - 6 68 - -
Vifa1g06543 263 Gene3D - 70 141 - -
Vifa1g06543 263 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vifa1g06543 263 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vifa1g06543 263 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vifa1g06543 263 CDD SANT 16 62 IPR001005 -
Vifa1g06543 263 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vifa1g06543 263 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa1g06543 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06543 Vifa-Chr1 1014269619 1014270966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06543 1 118 MYB Transcription Factor Family AT5G65790 79.661 2.79e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g06543 Myb_DNA-binding 4.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06543 K09422 - gmx:778160 289.656