Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06542 ATGGCAAATTCATTTGGTTTCTTTCTGTTTCTGGTTTTGTTTTTTGCTGTTACAGTTTTACTTCACGCACAACAACAAACAGGTTTCATAAGCATTGATTGTGGAAGTTCAGAGGATTTATACACAGATGATGTAACAAAAATAAAATACAGTTCAGATGGATCATACATACAAACAGGAGTTAACAGAATTATTTCTTCTGACTATGCATATCCAGCCAATCCAAATCTACCATTACCACTCTCAGATCTCAGAAGTTTTCCTCAAGGAAAACGAAACTGTTACCAATTAACCACCGGAAGAAAAGGAAGTTTATATTTAATAAGAGCTTCTTTCTTGTATGGAAACTACGACGGCGTAAACAAATTACCAGAATTTGATCTCTTTGTTGGTGTAAATTTCTGGTCATCAGTGAAATTTAAGAATGCATCAGACGAACTTACATTGGAAATAATCAGCATGGCACAATCTGAAGAAATAAACGTTTGTCTTGTGAATAAAGGAAAGGGAATTCCGTTTATCTCAGGGTTGGAACTTAGACCGATTAGTAATTCTATTTACAACACTGAGTTTGGAGATTCTGCTTCACTTTTGCTTTTCAAAAGATGGGATGTTGGTTCATTCAATGGAAGTGGTAGATATGAAGATGATGTTTATGATAGAATTTGGTTTCCTTTTAGTTCCTCTTCATGGAAATCTCTCAACAGTTCTGTAGTAGTTGATGATAATGGAGATGGATATAAAGTACCATCTGAAGTTATAAGAACCTGTTCTACACCAAAGAATGAGAATGATTCCTTGGAATTTTCTTGGACTTCAAATGATCCAAATACGAAATTTTATGTCTACTTGTATTTTGCTGAAGTGGAGAGACTTCAGAGAACTCAACTGAGAAAATTCAGTGTTTCTTGGAATGGTTCTCCTTTGAGTACATCACTAGTACCAAAATACTGGCAAGCAACCACTCTTTTTAATTCAAAGTCGTTGGTCGCAGACGAACATAGAATTTCTATACAGAGAACCGAAGATTCGACGCTTCCACCTATTCTTAATGCAGTGGAGATTTATGTAGTTAGACAATTGGATGCACTTCCAACATTTGAAGAAGATGTTGAAGCTATAAAGAGTGTAAGAGAAAGTTATAGAGTTGAAAGAGATTGGTTTGGTGATCCATGTGAGCCAAACAACTACACTTGGGAAGGCTTAAAATGCAACTACAGCACTTCACTTCCTCCAAGAATTGTATCACTGAATCTGAGCCAAAGCAGTCTGACTGGAATCATAACTCCAGCCATCTCCAATTTGACTTTCTTGGAATCTTTGGACTTATATAACAATAGCTTAACCGGATCAATACCTCAGGTTTTGGAAGAATTGAAATCCCTTAAATATTTGGATTTAAGGGGAAACCAACTTTCAGGTTTTGTTTCTACCACTCTCCTAGAAAGATCAAAGAAGGGATTACTTACTTTGAGGGTGGATGATAAAAATCTCTCTGGTTCAAGTAAGAAAAAGAAGGTAATTGCTCCCATTGTTGCACCAATAACATCAGTTATAGTTCTGTTAGTCATTGCCATTCTCTATTGGAAGCTTCGAAGAAGAAATAAGCAATCAGAGGATGAGATGAGTATGATCAACAAAAGTACAGGAACTGTAGTATCAAAGAAGTTACAATACAATTATTCTGAGGTGTTGTCCATCACCCGCAACTTTGAATTGGTCATTGGGAGGGGAGGATTTGGAAGTGTTTATAGTGGTCAGATGAAAGATGGCAATAAAGTTGCAGTCAAGATGCTTTCTGCATCTTCAGCTCAGGGACCAAAGGAATTTCAAACTGAGGCTGAACTTTTGATGACTGTTCATCACAAAAATTTGGTATCCTTCATTGGCTATTGCGATGAAGGTGACAAAATGGCACTCATATATGAGTACTTGGCTAATGGCAACCTTAAAGAAAATCTCTCAGAAAAAAGTTTACATTGCTTGAGTTGGGAAAGGCGAATTCAAATAGCAATTGATGCTGCAGAGGGATTGGATTATCTACACCATGGATGCAAGCCACCTATAATACACCGAGATGTAAAATCGGCTAACATTCTTCTAAGTGAAGATTTAGAAGCTAAGATAGCAGATTTTGGACTCTCTAAGGTGTTTAAGAATAGTGATAATGGAAATTCAGAATCTGCAATTATTCATGTTGATGATAAAAATGAAAAATCTACAATCATGGGAACAATGGGGTACCTTGATCCAGAGTACTACAAACTAGGGAACTTGAATGAAAAAAGTGACATCTATAGCTATGGAATTGTACTATTAGAATTGATCACAGGTCTCCCTGCTGTGATTAAAGGAAAGCCATCAATTCACATACTTGAGTTTGTAAGACCTCATATTGAAAAAAGTGATTTAAGCAAAATTATAGATCCAAGACTCCAAGGAAAATTTGATGAAGATTCATGCCAGAAAGTTTTAGGATTAGCAATTTCTTGCACTGCATCAACCTCAATTCAAAGACCAACAATGAATGTCGTGTTATCTGAGCTTAAACAGCGTGTTAAAATAGAGTTTCCTAGTGATAGGGAAATATTTGAGGCTTCAAGACATATGTATAGTGAATATTATAGTTCATCTGATGCTTTTAATTCCATGGAGGGTGAATCTATGACACATCCTTTCCCAAGGTAA 2688 0.3612 MANSFGFFLFLVLFFAVTVLLHAQQQTGFISIDCGSSEDLYTDDVTKIKYSSDGSYIQTGVNRIISSDYAYPANPNLPLPLSDLRSFPQGKRNCYQLTTGRKGSLYLIRASFLYGNYDGVNKLPEFDLFVGVNFWSSVKFKNASDELTLEIISMAQSEEINVCLVNKGKGIPFISGLELRPISNSIYNTEFGDSASLLLFKRWDVGSFNGSGRYEDDVYDRIWFPFSSSSWKSLNSSVVVDDNGDGYKVPSEVIRTCSTPKNENDSLEFSWTSNDPNTKFYVYLYFAEVERLQRTQLRKFSVSWNGSPLSTSLVPKYWQATTLFNSKSLVADEHRISIQRTEDSTLPPILNAVEIYVVRQLDALPTFEEDVEAIKSVRESYRVERDWFGDPCEPNNYTWEGLKCNYSTSLPPRIVSLNLSQSSLTGIITPAISNLTFLESLDLYNNSLTGSIPQVLEELKSLKYLDLRGNQLSGFVSTTLLERSKKGLLTLRVDDKNLSGSSKKKKVIAPIVAPITSVIVLLVIAILYWKLRRRNKQSEDEMSMINKSTGTVVSKKLQYNYSEVLSITRNFELVIGRGGFGSVYSGQMKDGNKVAVKMLSASSAQGPKEFQTEAELLMTVHHKNLVSFIGYCDEGDKMALIYEYLANGNLKENLSEKSLHCLSWERRIQIAIDAAEGLDYLHHGCKPPIIHRDVKSANILLSEDLEAKIADFGLSKVFKNSDNGNSESAIIHVDDKNEKSTIMGTMGYLDPEYYKLGNLNEKSDIYSYGIVLLELITGLPAVIKGKPSIHILEFVRPHIEKSDLSKIIDPRLQGKFDEDSCQKVLGLAISCTASTSIQRPTMNVVLSELKQRVKIEFPSDREIFEASRHMYSEYYSSSDAFNSMEGESMTHPFPR 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06542 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Vifa1g06542 895 CDD STKc_IRAK 575 851 - -
Vifa1g06542 895 FunFam Leucine-rich repeat receptor-like kinase 369 501 - -
Vifa1g06542 895 Gene3D Ribonuclease Inhibitor 360 501 IPR032675 -
Vifa1g06542 895 Pfam Leucine rich repeat 413 472 IPR001611 GO:0005515
Vifa1g06542 895 Pfam Protein tyrosine and serine/threonine kinase 573 849 IPR001245 GO:0004672|GO:0006468
Vifa1g06542 895 SUPERFAMILY Protein kinase-like (PK-like) 555 849 IPR011009 -
Vifa1g06542 895 SMART serkin_6 569 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06542 895 ProSitePatterns Protein kinases ATP-binding region signature. 575 597 IPR017441 GO:0005524
Vifa1g06542 895 PANTHER OS07G0107800 PROTEIN-RELATED 30 853 - -
Vifa1g06542 895 SUPERFAMILY L domain-like 387 501 - -
Vifa1g06542 895 Gene3D Phosphorylase Kinase; domain 1 551 644 - -
Vifa1g06542 895 FunFam Leucine-rich repeat receptor-like protein kinase 546 644 - -
Vifa1g06542 895 ProSiteProfiles Protein kinase domain profile. 569 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06542 895 Gene3D Transferase(Phosphotransferase) domain 1 645 866 - -
Vifa1g06542 895 Pfam Malectin-like domain 32 357 IPR024788 -
Vifa1g06542 895 FunFam PTI1-like tyrosine-protein kinase 3 645 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06542 Vifa-Chr1 1014128116 1014133856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06542 9 878 Receptor kinase-like Gene Family AT4G29180 49.160 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vifa1g06542 Malectin_like 2.4e-105 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06542 - - gmx:100793137 1227.23