Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06541 ATGAATGATGTGGTTTGGATTGAAGGATTGGATTATCTACACCATGGATGCAAGCCACCTATAATACACCGAGATGTAAAATCGGCTAATATTCTTCTAAGTGAAGACTTAGAAGCTAAGATAGCAGATTTTGGACTCTCTAAGGTGTTTAAGGATAGTGATAATGGAAATTCAGAATCTGCAATTATTCATGTTGATGATAAAAATGAAACATCTACAATAATGGGAACAATGGGGTACCTTGATCCAGAGTACTACAAATTAATGAACCTGAATGAAAAAAGTGACATCTATAGCTATGGAGTTGTACTATTGGAATTAATCACAGGTCTCCCTGCAGTGATTCAGGGAAAGCCATCAATTCACATACTTGAGTTTGTAACACCACATATTGAAAAAAGTGATTTAAGCAAAATTATAGATCCAAGACTCCAAGGAAAATTTGATGAAAATTCATGCCAGAAAGTTTTAGGATTAGCAATTTCTTGCACTGCATCAACCTCAATTCAAAGACCAACAATGAGTGTTGTATTATCTAAGCTTAAACAGTGTGTTAAAATGGAGTCTCCTAGTGATAGGGAAATATTTGAGCCACCAAGACATATTTACAGTGAACTTTCTAGTTCATCTGATGCTTTTAAATCCATGGATAGTAGTGAATCTATGACACATCCTTTCCCAAGGTAA 687 0.3493 MNDVVWIEGLDYLHHGCKPPIIHRDVKSANILLSEDLEAKIADFGLSKVFKDSDNGNSESAIIHVDDKNETSTIMGTMGYLDPEYYKLMNLNEKSDIYSYGVVLLELITGLPAVIQGKPSIHILEFVTPHIEKSDLSKIIDPRLQGKFDENSCQKVLGLAISCTASTSIQRPTMSVVLSKLKQCVKMESPSDREIFEPPRHIYSELSSSSDAFKSMDSSESMTHPFPR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06541 228 MobiDBLite consensus disorder prediction 207 228 - -
Vifa1g06541 228 ProSiteProfiles Protein kinase domain profile. 1 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06541 228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 21 33 IPR008271 GO:0004672|GO:0006468
Vifa1g06541 228 SMART serkin_6 3 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06541 228 PANTHER OS07G0107800 PROTEIN-RELATED 8 188 - -
Vifa1g06541 228 MobiDBLite consensus disorder prediction 207 222 - -
Vifa1g06541 228 SUPERFAMILY Protein kinase-like (PK-like) 8 212 IPR011009 -
Vifa1g06541 228 Gene3D Transferase(Phosphotransferase) domain 1 5 199 - -
Vifa1g06541 228 Pfam Protein kinase domain 7 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06541 Vifa-Chr1 1014110149 1014111076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06541 8 188 Receptor kinase-like Gene Family AT4G29180 48.087 2.88e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vifa1g06541 Pkinase 7.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06541 - - lja:Lj0g3v0276029.1 296.204