Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06534 ATGGTGGAGAAGGGTGCTGGTGGTAGAAAAGAGGAGGTTGTTACCAGGGAGTACACGATCAACCTTCACAAGCGTCTTCATGGCTGCACATTCAAGAAGAAGGCACCAAAAGCTATCAAGGAGATAAGGAAGTTTGCTCAAAAAGCCATGGGCACTAACGATGTTAGGGTCGATGTCAAGCTGAACAAGGCTATCTGGAGCCAAGGAATTAGAAGTGTTCCCAGGAGAGTCAGAGTACGTATTGCGCGCAAGAGGAACGACGATGAAGATGCAAAGGAGGAATTATACTCTCTTGTTACAGTTGTTGAAATTCCTAAGGAGGAGCTAAAAGGTTTGGGCACCAAGGTCATAGATGATGAAGATTGA 366 0.4563 MVEKGAGGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKLNKAIWSQGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKGLGTKVIDDED 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06534 121 ProSitePatterns Ribosomal protein L31e signature. 55 69 IPR020052 GO:0003735|GO:0005840|GO:0006412
Vifa1g06534 121 SMART Ribosomal_L31e_2 11 94 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vifa1g06534 121 CDD Ribosomal_L31e 10 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vifa1g06534 121 PANTHER 60S RIBOSOMAL PROTEIN L31 2 120 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vifa1g06534 121 SUPERFAMILY Ribosomal protein L31e 12 93 IPR023621 -
Vifa1g06534 121 Gene3D - 10 121 IPR023621 -
Vifa1g06534 121 FunFam 60S ribosomal protein L31 8 120 - -
Vifa1g06534 121 Pfam Ribosomal protein L31e 12 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06534 Vifa-Chr1 1013005474 1013006797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06534 8 121 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 82.456 4.71e-67 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06534 K02910 - gmx:100499742 213.772