Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06533 ATGGAAAACGTCAAAGATCCATCATTCTACCGCAATCCTGTCATATTGCAGAGCGAGGATTTGACAAATTATATATTGGAGACTGCTGTTTACCCCAGAGAGCCAGAGTCTCTCAAAGAGCTGAGGAAAGCCACTAAGAGTCACCCTTGGGGTTTCATAGCTACTTTACCCGAGGCTGGTTCACTAATCACTATACTTTTGAAGCTCTTGAATCCCAAAAAGACAATTGAAGTGGGAGTTTTTACTGGATACTCTCTTCTCCTCACTGCACTCAGCATTCCTCGTGATGCAAAGATTACGGCCATAGACATTGACAGGAAAGCTTATGAAATTGGATTACCGGTCATAAGAAAGGCTGGAATGGAACACAAGATTGATTTCATTGAGTCTCCGGCTCTACCAATTTTGGATAAACTACTAGAAGATCCATCAAATGAAGGAAGTTTTGACTATGCTTACGTTGATGCTGACAAAGATAACTATGTAAACTACCATGAAAGACTAATAAAACTAGTCAAAGTTGGTGGCTTACTTATATATGACAACACTCTTTGGGGTGGAAGAGTTGCTTGGGCTGAAGAGAAAGTTCCACCACATGCCAAAGTAGGAAGAGCAGCAGCAATTGAATTCAACAAAACAATCAGAGATGACTCACGTGCTGATTTTTCTCTCAATTCTGTTGGTGATGGACTCACTATTTGTAGGCGTATTGTCTAA 717 0.4073 MENVKDPSFYRNPVILQSEDLTNYILETAVYPREPESLKELRKATKSHPWGFIATLPEAGSLITILLKLLNPKKTIEVGVFTGYSLLLTALSIPRDAKITAIDIDRKAYEIGLPVIRKAGMEHKIDFIESPALPILDKLLEDPSNEGSFDYAYVDADKDNYVNYHERLIKLVKVGGLLIYDNTLWGGRVAWAEEKVPPHAKVGRAAAIEFNKTIRDDSRADFSLNSVGDGLTICRRIV 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06533 238 Pfam O-methyltransferase 28 237 IPR002935 GO:0008171
Vifa1g06533 238 CDD AdoMet_MTases 76 180 - -
Vifa1g06533 238 Gene3D Vaccinia Virus protein VP39 8 238 IPR029063 -
Vifa1g06533 238 PANTHER O-METHYLTRANSFERASE-RELATED 12 237 - -
Vifa1g06533 238 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 18 236 IPR029063 -
Vifa1g06533 238 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 14 237 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06533 Vifa-Chr1 1012839837 1012841180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06533 15 237 Monolignol Biosynthesis Gene Families AT4G26220 60.538 8.19e-98 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06533 K00588 - gmx:100800911 416.001