Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06518 ATGGGTCGCCGAAAAACCAACAATCAAATCAACCAAGACAGTAACAACCACACAAACATGGCCAACAACAACAACCATCTTCGATTCCAGGATGCCGATGAAGTTATCGAAGACGCTGCTGAAACTTCAAACATCGACCAATCCATGGGTGGTTGCGAACTTGACGATTCAAATGACAAAACCAGCGCTGATTACTACTTTGATTCTTACTCTCACTTTGGAATTCATGAAGAAATGTTGAAGGACACTGTAAGAACCAAGACATATCAAAATGTTATTTATCAGAATAGGTTTTTATTCAAGAATAAAGTAGTTCTTGATGTCGGTGCCGGAACTGGGATTTTGTCACTATTCTGTGCCAAAGCAGGTGCAGAACACGTGTATGCCGTTGAATGCTCTGATATGGCTGACATGGCAAAGCAGATAGTTGAAACTAATGGTTACTCTAAAGTTATAACAGTTTTGAAAGGGAAGATTGAAGAACTTGAACTTCCTGTTCCTAAAGTTGATATAATCATTTCCGAATGGATGGGATATTTCTTGTTGTTTGAGAATATGTTAAATTCCGTGCTTTATGCACGTGATAAATGGCTTGTTGATGATGGAGTTATTCTACCTGATATTGCATCCCTCCATCTGACTGCAATTGAAGATAAGGACTACAAAGAAGATAAAATTGAGTTTTGGAACAATGTATATGGATTTGACATGAGCTGCATCAAGAAGCAAGCCTTGACAGAGCCTCTTGTTGATACAGTTGACTCGAATCAGATTGCAACAAACAGTCAGTTACTCAAGACAATGGACATCTCAAAAATGTCGGCAGGAGATTGTTCATTCACAGCACCTTTTAAGCTACAAGCTTCTCGTGACGATTTTATTCATGCTCTTGTGGCATATTTTGATGTATCGTTTACAAAGTGTCATAAGTTGATGGGCTTTTCAACAGGGCCGAGATCACGAGGTACACATTGGAAACAAACAGTCCTATATCTGGAGGATGTCTTGACCATTTGTGAAGGGGAGACGATTGTAGGGAGCTTGACCGTTGCCCCAAATAAAAAGAATCCTCGTGATGTTGACATAATGCTCAAGTATACATTGAATGGCAGGCGATGCAATGCTTCGAGGGTTCAGTATTACAAGATGCGTTAA 1155 0.3974 MGRRKTNNQINQDSNNHTNMANNNNHLRFQDADEVIEDAAETSNIDQSMGGCELDDSNDKTSADYYFDSYSHFGIHEEMLKDTVRTKTYQNVIYQNRFLFKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSDMADMAKQIVETNGYSKVITVLKGKIEELELPVPKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDDGVILPDIASLHLTAIEDKDYKEDKIEFWNNVYGFDMSCIKKQALTEPLVDTVDSNQIATNSQLLKTMDISKMSAGDCSFTAPFKLQASRDDFIHALVAYFDVSFTKCHKLMGFSTGPRSRGTHWKQTVLYLEDVLTICEGETIVGSLTVAPNKKNPRDVDIMLKYTLNGRRCNASRVQYYKMR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06518 384 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 69 383 IPR029063 -
Vifa1g06518 384 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 20 371 IPR025799 GO:0016274|GO:0018216
Vifa1g06518 384 Pfam Ribosomal protein L11 methyltransferase (PrmA) 100 175 - -
Vifa1g06518 384 Gene3D Vaccinia Virus protein VP39 54 206 IPR029063 -
Vifa1g06518 384 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 63 364 IPR025799 GO:0016274|GO:0018216
Vifa1g06518 384 Gene3D - 209 384 - -
Vifa1g06518 384 CDD AdoMet_MTases 105 205 - -
Vifa1g06518 384 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g06518 384 FunFam probable protein arginine N-methyltransferase 1 54 206 - -
Vifa1g06518 384 FunFam Blast:Protein arginine N-methyltransferase 1 208 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06518 Vifa-Chr1 1010973523 1010976339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06518 7 346 C2H2 Transcription Factor Family AT3G12270 35.912 1.27e-65 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06518 K11434 - gmx:100781777 660.218