Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06516 ATGGAACATTTAACGAAAGAACGAAACAACGGCCATAGAATCACTTTTCCTGCGACAGCACAAATGTTGAAGAGAGAAGAATGTAAGCACACTAAACATGATTCTAGCTTCTCTCGTTGGAAGATTCTTATTGGTCCTTCTGATTGGGAAGATTATTCCAAGGGAAAGGAAGGATCTACACGATACAGAATCCAAAACCTTCCACAAAATTCGGGTCCGGGAGTGTACGAGCTCGGAGTAGCTATGTCGACTAGTGGTTTAGGGCGTGAAATTTACAAGCTTGCAACTCGCGTTGTTGTGGTTTATCTAGGAAAAGCTGATAATGTGAGAACAAGACTTCAAAGTTATGGTAGAAATGGAGCTCATTTGGGTAATGGTTGTTCTACATTTGAATCTTCCGAAGAAAAGGGACATTCATTGTTTCATGACATCTTTTTTCAAAGCTTCCCAATTGTTTATAGATGGGCTCCTATGCAGAACAAGGGAGATGCATTGCAAACAGAATCTCAACTTCTAAGTACATTTGATTATGCATGGAACACAATTAATAACGGTACGCGCCGGCCTGCTGATATTCTTCAAATGCTCAACAAAATTTCTTCAGGGACAAGAACATTTTCAGAAGTAGCCAAATCACTTGTACCCTTCACTCAAAAGAAAGTAGGGATACTAATTAAAGCACGCAAATTGCCTATGACAGATAACAAATCAGACAATGACGGCTACAATTTCTTATCTCGCGTGTTCAAATTCAACCGGTCACGTAAGGTAGTGATTCATGATACAAGTGATTTTGCAGTTGAGAAAAATGGTAAAATTTGTGGAGTGATTTTGGACGATGGTTCTATTTGTTCAAAGATGCCGGTTGGAAAAAGAGTTAGGTGTAATGAACATAAAGGAATGAGAATTAATATGGTCACTACAAAAGCAATGAGAAGATCCAAATCAGAATCAGAAAATGTGTTCACTGCAAAAGAAATAAGAAGATCCAAGTCAGAATCAGAAAAAGTGAGTGAAAGTCTTGTCGATGAAAGTATCACCAAAACTGTTATATGTGGAATTGTTTTGGAAGATGGATCAACTTGTAGAAAAGAACCAGTTAAAGGAAGAAAAAGATGTCATGAACATAAAGGGAAGAGAGTTCGCGCATCTGTTAGTATAAATCAGAAATAA 1173 0.3777 MEHLTKERNNGHRITFPATAQMLKREECKHTKHDSSFSRWKILIGPSDWEDYSKGKEGSTRYRIQNLPQNSGPGVYELGVAMSTSGLGREIYKLATRVVVVYLGKADNVRTRLQSYGRNGAHLGNGCSTFESSEEKGHSLFHDIFFQSFPIVYRWAPMQNKGDALQTESQLLSTFDYAWNTINNGTRRPADILQMLNKISSGTRTFSEVAKSLVPFTQKKVGILIKARKLPMTDNKSDNDGYNFLSRVFKFNRSRKVVIHDTSDFAVEKNGKICGVILDDGSICSKMPVGKRVRCNEHKGMRINMVTTKAMRRSKSESENVFTAKEIRRSKSESEKVSESLVDESITKTVICGIVLEDGSTCRKEPVKGRKRCHEHKGKRVRASVSINQK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06516 390 SMART uri_9 91 185 IPR000305 -
Vifa1g06516 390 Pfam GIY-YIG domain-containing protein 37 193 - -
Vifa1g06516 390 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 330 384 IPR038909 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06516 11 383 HRT Transcription Factor Family AT5G56780 41.688 1.19e-91 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Vifa1g06516 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06516 - - lang:109350609 418.698