Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06513 ATGGAAGAGGTGTGGAAAGACATAAACATGTCTTCATTGAATGAACAAAACACACGACGACCCATGATTATGAGTACTCGTGATTCCTCCACCTTTGGTGGTGTTATCCTTCAAGACTTTCTCACTCGACCAAAAAGCATTGATCATCATTACTCTTCTAATAACTCAACTTCTTCTGTTGCTTCAGATCAAAATCCTTCTTTTTATTGCCCTAATACTCTTTCAACTGCCCCACCACCACTTGTCACTGCTCTCAGTTTAAACTCGCGTCCTAATCATTTTCCTTTCGACCCTCGTATCAGACACAACAATGATAACAATTCTCAGTTACTACTTCAACAACAACACCAACATCATCAACAACAAAGAAATATTACTGCTCCAAAGGCTTCTTTTGTCGTCAATCCCTCACCATTTGATCCAAACGTCGGTGTTGTATCTAATGCTTTCACTTGTTTTGGAAAGAGATTTGGTGAACCACCTGATGTTAGTCCTGGTGAAAGGAGAAACAAGAGAATGATCAAGAATCGTGAATCTGCTGCACGTTCACGAGCTTACACGAACGAACTGGAGCAAAAAGTTGATTTTTTGATGGAAGAGAATGCAAAACTCAAAAGACAACAACAAGAGTTATGGGAAGCAGCAGCAAGTAGTGCACCAAAGAAGAATAGCTTACATCGAACATTAACAGCTCCATTTTAA 702 0.396 MEEVWKDINMSSLNEQNTRRPMIMSTRDSSTFGGVILQDFLTRPKSIDHHYSSNNSTSSVASDQNPSFYCPNTLSTAPPPLVTALSLNSRPNHFPFDPRIRHNNDNNSQLLLQQQHQHHQQQRNITAPKASFVVNPSPFDPNVGVVSNAFTCFGKRFGEPPDVSPGERRNKRMIKNRESAARSRAYTNELEQKVDFLMEENAKLKRQQQELWEAAASSAPKKNSLHRTLTAPF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06513 233 Pfam bZIP transcription factor 168 213 IPR004827 GO:0003700|GO:0006355
Vifa1g06513 233 SUPERFAMILY Leucine zipper domain 168 213 IPR046347 GO:0003700|GO:0006355
Vifa1g06513 233 CDD bZIP_plant_BZIP46 168 218 - -
Vifa1g06513 233 Coils Coil 187 207 - -
Vifa1g06513 233 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 1 232 IPR043452 GO:0003700|GO:0045893
Vifa1g06513 233 Gene3D - 166 217 - -
Vifa1g06513 233 SMART brlzneu 164 224 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06513 Vifa-Chr1 1010297458 1010298390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06513 1 189 bZIP Transcription Factor Family AT2G17770 33.161 4.19e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g06513 bZIP_1 1.8e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06513 K14432 - cave:132172148 144.436