Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06510 ATGGGAAGAAAATGCTCACATTGTGGAAACATAGGTCATAATTCAAGAACTTGTAATTCTTTAAGAGGAAATGGTAACAATTTTCTTGGAGTTAGACTCTTTGGTGTTCAACTTGATTTATCATCTTCATATGTTTCCATGAAAAAGAGCTTTAGCATGGATTCTTTTCCTACTTCATCTTCTTCTCCTTCTTCTTCGTTTTCTTCTACAAGATTAATCATTGAAGATAGAATATCTGTGGGCTATCTCTCCGATGGTCTCGTAGTTCGAACACAAGAAAGGAAGAAAGGAGTTCCTTGGACAGAAGAAGAGCATATAAAATTTCTTGTTGGACTTGAGAAGCTTGGAAAAGGAGATTGGAGAGGTATCTCAAGAAGCTATGTGACAACAAGAACACCAACACAAGTTGCAAGTCATGCTCAAAAGTACTTTATTAGGCTTTCAACTTTGAATAAGAAAAAAAGACGTTCAAGTCTCTTTGACATGGTTGGTAGCATCAACACAAATAGAAGAGTTGATTCAATCAACAAAGGAAATTCAGTTGATTCACTTCTACTAACCTCATTTCAACAACAAGAAACAAAATCAACTCAAGTTGAAGATTATGCTGAAGAAGAACACGAAGATGTGACTAATTGGTTACATCCTCTAACAAAATCTTTGAATATGACATTGGTGATACCAAATTCTTCAAATGCAACACCACCTGATCTTGAGCTAACTCTTGCAGTTCCCAAGTCTAACAACATGGAACAAGATGAAACATCCAAGAGTTCTTTTTTTAATGGTCCAATTAGTGTTACTTAA 807 0.3519 MGRKCSHCGNIGHNSRTCNSLRGNGNNFLGVRLFGVQLDLSSSYVSMKKSFSMDSFPTSSSSPSSSFSSTRLIIEDRISVGYLSDGLVVRTQERKKGVPWTEEEHIKFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKYFIRLSTLNKKKRRSSLFDMVGSINTNRRVDSINKGNSVDSLLLTSFQQQETKSTQVEDYAEEEHEDVTNWLHPLTKSLNMTLVIPNSSNATPPDLELTLAVPKSNNMEQDETSKSSFFNGPISVT 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06510 268 SMART sant 96 146 IPR001005 -
Vifa1g06510 268 PANTHER TRANSCRIPTION FACTOR KUA1 3 240 - -
Vifa1g06510 268 CDD SANT 99 144 IPR001005 -
Vifa1g06510 268 SUPERFAMILY Homeodomain-like 93 148 IPR009057 -
Vifa1g06510 268 FunFam transcription factor MYB1R1 98 149 - -
Vifa1g06510 268 Gene3D - 98 150 - -
Vifa1g06510 268 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Vifa1g06510 268 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Vifa1g06510 268 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Vifa1g06510 268 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 146 IPR006447 GO:0003677
Vifa1g06510 268 MobiDBLite consensus disorder prediction 246 268 - -
Vifa1g06510 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06510 Vifa-Chr1 1010020496 1010021532 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g06510 Myb_DNA-binding 1.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06510 - - pvu:PHAVU_004G171200g 257.299