Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06509 ATGACACTAAAAGCCTTTATATCACTGGTCTTCAATTTAATTGGCCTAGAAGATGGACAGACAAACCAGGATGCAACTTTACCTTACATTGTTGCCACATCAATTGTCCCAAACAAGATCAATCAACAATCATCAGAATCTTCAACATCCAATATTATGGAGAAAAACAATGATGTTGGATTGTGCTGTGTGTGCTTGTCTATGTTAAACAACAAAGATGAAACTCGTGTGCTTCCTTGTTCGCACGAATTTCATAAGGTTTGTGTGAATAGTTGGCTAAAGGGTCATCATAAAACATGTCCATTGTGTCGTTTTTCAATTGGAGCTGAGGAAAAGTCTCATCGTGCTGAAATGTTTTCTGAAGAGATGCTAATATGGTTTTCCTCTTTTCATATTGCTGGGAATTCGAAGTATTGGAAGTTTGAATTCAAATTAAGTTTTGGCGCTCTCTGTAAAAGAAAGATTCGAAATTCAAATTTTTGA 483 0.3582 MTLKAFISLVFNLIGLEDGQTNQDATLPYIVATSIVPNKINQQSSESSTSNIMEKNNDVGLCCVCLSMLNNKDETRVLPCSHEFHKVCVNSWLKGHHKTCPLCRFSIGAEEKSHRAEMFSEEMLIWFSSFHIAGNSKYWKFEFKLSFGALCKRKIRNSNF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06509 160 ProSiteProfiles Zinc finger RING-type profile. 62 104 IPR001841 -
Vifa1g06509 160 CDD RING-H2_PA-TM-RING 62 104 - -
Vifa1g06509 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 109 IPR013083 -
Vifa1g06509 160 SMART ring_2 62 103 IPR001841 -
Vifa1g06509 160 Pfam Ring finger domain 62 104 IPR001841 -
Vifa1g06509 160 PANTHER TARGET OF ERK KINASE MPK-1 37 112 - -
Vifa1g06509 160 SUPERFAMILY RING/U-box 61 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06509 Vifa-Chr1 1009696441 1009698007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06509 55 113 C3H Transcription Factor Family AT5G45290 45.000 2.12e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06509 - - gmx:100809233 185.267