Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06498 ATGGAAAATCCTTGTCCATCTCGTTCGTCTTTGTTCGATTCCTTCGGGAATTTGGTTGATAAGGTTAAACAAATTGGTACTCTCGCTGTTTCCGCGATCATTGGGAACATTTTCTCGGCGATCTTGACCTTTTGCTTCGCATTAGTGGGGACGTTGTTGGGTGCTATGACAGGAGCTTTGATAGGTCAAGAGACAGAAAGTGGTTTCATTCGAGGTGCTGCTGTTGGTGCTATATCAGGAGCTGTTTTTTCGATTGAAGTGTTTGAATCATCTCTTGTTCTTTGGCATTCTGATGAATCTGGGATTGGTTGTCTTTTATATTTGATTGATGTTATTGCTAGTTTGTTGAGTGGAAGACTCGTGCGTGAGAGGATTGGTCCTGCAATGTTGAGTGCTGTTCAGAGTCAGATGGGTGCTGTTGAAACCAGCTTTGACGAGGTTCAAAACCTCTTTGACATTGGTGGTTCCAAAGGGTTATCCGGAGATTCCGTTGCGAAAATCCCAAAAATCAAAATCACCGCCGACAATGTGGATGCATCAGGGGAGAAAGTTTCTTGTTCAGTTTGTCTCCAGGACTTTCAGCTCGGCGAGACTGTTAGAAGTTTACCTCATTGTCATCACATGTTTCATCTACCTTGCATAGATATGTGGCTCTTGAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 696 0.4368 MENPCPSRSSLFDSFGNLVDKVKQIGTLAVSAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNLFDIGGSKGLSGDSVAKIPKIKITADNVDASGEKVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDMWLLRHGSCPLCRRDL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06498 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 231 IPR013083 -
Vifa1g06498 231 SMART ring_2 186 227 IPR001841 -
Vifa1g06498 231 SUPERFAMILY RING/U-box 180 231 - -
Vifa1g06498 231 FunFam NEP1-interacting protein-like 1 147 231 - -
Vifa1g06498 231 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Vifa1g06498 231 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 18 230 IPR044523 -
Vifa1g06498 231 Pfam Ring finger domain 185 228 IPR001841 -
Vifa1g06498 231 CDD RING-H2_NIPL1-like 185 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06498 Vifa-Chr1 1008203325 1008204647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06498 17 231 C3H Transcription Factor Family AT5G66070 76.744 2.74e-118 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06498 - - lja:Lj2g3v1670720.1 413.69