Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06482 ATGGCGGAAACCGGTACTGACGGAAACGGAAACGGAAACGGTTTTACCTCTCTCCACGGCGACTTGGACTTGACGATAATCGCGGCTCGCCGGTTACCTAACATGGACATCGTTTCCGAGCGTTTCCGTCGCTGCGTTACCGCTTGCGACACTATTAAATACAATTCGACTTCTGATGCGGCGGAGGAGATTACTCACAAGGAGCACCGTCATCGAAGGAAGATCATAACGAGTGATCCTTATGTCACTGTTACGGTGCCGCAAGCTACGGTTGCACGGACGCGAGTGCTTAAGAACTCGCCGAATCCAGAGTGGAAGGAACGCTTTTACATTCCGTTAGCACATTCGGTTGCCGATTTGGAGTTTCGTGTTAAGGATGATGATGCTTTTGGTTCTCAAACTATGGGGACAGTTAAGATTCCGGCGCAGAGAATTGCCACCGGCGAGACTATTTCCGGTTGGTTTCCTATTCTTGGGACCAACGGTAAGCCGCCGAAACCGGACACTGCGCTTCATTTGGAAATGAACTTCACGCCGGTGGACCAGAATCCTCTATACCTTCGCGGCATTGCGGCAGATCCGGAGCACAAAGGCGTGAGGCACACCTATTTTCCGGTGAGGAAGGGGAGTTTGGTGAGGCTTTACCAAGACGCACATTGTCCCCACGGAACTGTACCGGAGATTGAGCTTGATGATGGGAACGTTTATAAACCGGAGAATTGTTGGGAAGATATATGTTATGCTATAACAGAAGCTCATCACATGGTTTATTTAGTGGGTTGGTCAATCTACCATAAAGTGAGGCTTGTTAGGGAACCTTCTAGACCTCTGCCGCGAGGTGGAGACTTAACACTTGGTGAATTACTCAAGTATAAGTCTGAAGAAGGGGTGAGAGTTTTATTGCTTGTTTGGGATGATAAAACTTCCCATGATAAGGTCTTCTTCAAGTCGACTGGAGTAATGATGACTCATGATGAGGAAACAAAGAAGTTTTTCAAACATTCTTCTGTCATGTGTGTTTTGGCACCTCGTTATGCTAGCAGTAAGATGAGCTTCATTAAACAACAGGTTGTTGGAACTGTCTTCACACACCACCAAAAATGTGTTATTGTGGACACACAGGCTTCTGGTAATAACAGAAGGATATCCACTTTTATAGGAGGTCTTGATTTGTGTGATGGTCGCTATGACACACCCGAGCATCGACTTTTTCGTGATCTCGATACTATATTTGCCGGTGATTTCCACAATCCTACATTTCCTTCTGGAACAAGGGCTCCTAGACAACCGTGGCATGATTTGCACTGCAGAATTGATGGACCTGCTGCATATGATATTCTTATTAATTTTGAACAACGATGGAGAAAAGCAACTAAGTGGAAAGAGTTTGCATTTCTTTTTAAAAAAGCTTCTCAGTGGAATGATGATGCTTTAATAAGAGTAGAACGCATCTCATGGATATTAAGTCCTTCTCAGCGTACCTCAAAGGATGATTATACAACTGTTCCAGGGGATGATCCTTTAGTATGTGTTTCTAAAGAAGATAATCCTGAAAACTGGCATGTCCAGATCTTCCGCTCCATTGACTCAGGATCCTTGAAAGGATTTCCCAAACGTGTTGATGTTGCTCTATCCCAGAATCTCATATGTGCTAAAAATTTGGTTATAGACAAAAGCATTCAAACAGGATACATCCAAGCTATCAGATCTGCTCAACATTTCATTTATATTGAAAACCAATACTTCATCGGATCTTCATATGCATGGCCATCTTACAAAGATGCAGGGGCTGATAATCTTATCCCAATGGAATTGGCTCTGAAAATAGCTAGTAAAATCAGAGCTAATGAGAGATTTGCTATTTATATTGTTATACCAATGTGGCCAGAAGGCGATCCTAAATCTGGAGCTGTGCAAGAAATTCTTTTCTGGCAGGCTCAGACAATGCAAATGATGTATACTGTTGTTGCTAAAGAATTGAAATCAATGCAACTTAATGATGTGCACCCACAAGATTACCTCAATTTCTATTGCCTTGGTAATCGAGAACACTTCAATGAAGAAAGCTCAGGCACAAACGGTGCACCGATCTCTGGAGCATATAAATATCGCCGAAATATGATTTATGTGCATGCCAAGGGGATGATTGTGGATGATGAATATGTTATAGTGGGATCTGCTAACATAAACCAAAGATCTATGGCTGGTACTAAAGATACTGAAATAGCTATGGGTTCATATCAACCTCATTACACATGGTCTGCGAGGAAAAGACATCCACGTGGACAGATTTATGGTTACAGAATGTCACTTTGGGCAGAGCATCTTGGCATGTTAGATGAAAGTTTTAAAGAACCAGAGAGATTGGAGTGTGTACGGAAAGTGAATGAAATTGCAGACAATAATTGGAGAATTTACTCTTCCAACGAATTGTCACTTATACAGGGACATCTTCTTAAGTATCCTGTAAAAATTGATTCTGATGGGCTGGTCAGCTCATTACCCGACTGTGACAGTTTCCCTGATGCTGGTGGTAAGATATTGGGTGCTCATTCCGCCACAATTCCAGATATCCTAACAACGTAA 2586 0.4285 MAETGTDGNGNGNGFTSLHGDLDLTIIAARRLPNMDIVSERFRRCVTACDTIKYNSTSDAAEEITHKEHRHRRKIITSDPYVTVTVPQATVARTRVLKNSPNPEWKERFYIPLAHSVADLEFRVKDDDAFGSQTMGTVKIPAQRIATGETISGWFPILGTNGKPPKPDTALHLEMNFTPVDQNPLYLRGIAADPEHKGVRHTYFPVRKGSLVRLYQDAHCPHGTVPEIELDDGNVYKPENCWEDICYAITEAHHMVYLVGWSIYHKVRLVREPSRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKVFFKSTGVMMTHDEETKKFFKHSSVMCVLAPRYASSKMSFIKQQVVGTVFTHHQKCVIVDTQASGNNRRISTFIGGLDLCDGRYDTPEHRLFRDLDTIFAGDFHNPTFPSGTRAPRQPWHDLHCRIDGPAAYDILINFEQRWRKATKWKEFAFLFKKASQWNDDALIRVERISWILSPSQRTSKDDYTTVPGDDPLVCVSKEDNPENWHVQIFRSIDSGSLKGFPKRVDVALSQNLICAKNLVIDKSIQTGYIQAIRSAQHFIYIENQYFIGSSYAWPSYKDAGADNLIPMELALKIASKIRANERFAIYIVIPMWPEGDPKSGAVQEILFWQAQTMQMMYTVVAKELKSMQLNDVHPQDYLNFYCLGNREHFNEESSGTNGAPISGAYKYRRNMIYVHAKGMIVDDEYVIVGSANINQRSMAGTKDTEIAMGSYQPHYTWSARKRHPRGQIYGYRMSLWAEHLGMLDESFKEPERLECVRKVNEIADNNWRIYSSNELSLIQGHLLKYPVKIDSDGLVSSLPDCDSFPDAGGKILGAHSATIPDILTT 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06482 861 Pfam Phospholipase D Active site motif 706 733 IPR001736 GO:0003824
Vifa1g06482 861 Pfam Phospholipase D Active site motif 360 395 IPR001736 GO:0003824
Vifa1g06482 861 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 360 395 IPR001736 GO:0003824
Vifa1g06482 861 FunFam Phospholipase D delta 232 476 - -
Vifa1g06482 861 PANTHER PHOSPHOLIPASE D 17 849 IPR015679 -
Vifa1g06482 861 Gene3D C2 domain 18 190 IPR035892 -
Vifa1g06482 861 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 18 180 IPR035892 -
Vifa1g06482 861 CDD C2_plant_PLD 18 178 - -
Vifa1g06482 861 Pfam Phospholipase D C terminal 780 850 IPR024632 -
Vifa1g06482 861 SMART C2_3c 21 154 IPR000008 -
Vifa1g06482 861 Gene3D Endonuclease Chain A 229 479 - -
Vifa1g06482 861 SMART pld_4 706 733 IPR001736 GO:0003824
Vifa1g06482 861 SMART pld_4 360 395 IPR001736 GO:0003824
Vifa1g06482 861 Pfam C2 domain 20 157 IPR000008 -
Vifa1g06482 861 SUPERFAMILY Phospholipase D/nuclease 557 791 - -
Vifa1g06482 861 SUPERFAMILY Phospholipase D/nuclease 199 466 - -
Vifa1g06482 861 ProSiteProfiles C2 domain profile. 44 155 IPR000008 -
Vifa1g06482 861 Gene3D Endonuclease Chain A 532 755 - -
Vifa1g06482 861 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 706 733 IPR001736 GO:0003824
Vifa1g06482 861 PIRSF PLD_plant 9 861 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06482 Vifa-Chr1 1005694834 1005703296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06482 18 697 Phospholipase D Gene Family (Wang group) AT4G35790 70.365 0.0 1022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06482 K01115 - gmx:100801787 1488.78